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Guyton1972 Pulmonary Oxygen Intake Lab

About lab

Two-model lab for Guyton1972 Pulmonary Oxygen Intake: a core SBML simulator wired into a dedicated visualization sub-model that turns the raw state into friendly timeseries and a plain-language summary. This a model from the article: Circulation: overall regulation. It can be used to explore cardiac dynamics and compare response patterns across conditions.

Runtime

Duration600
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packageguyton1972-pulmonary-oxygen-intake-lab
Created2026-05-14
Updated2026-05-14
cardiovascularscenariostimulussbmlbiomodels_ebifaithfulvisualization

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "integration_step",
        "maps_to": "guyton1972_pulmonary_oxygen_intake_core.integration_step"
      },
      {
        "name": "parameter_overrides",
        "maps_to": "guyton1972_pulmonary_oxygen_intake_core.parameter_overrides"
      },
      {
        "name": "initial_conditions",
        "maps_to": "guyton1972_pulmonary_oxygen_intake_core.initial_conditions"
      }
    ],
    "outputs": [
      {
        "name": "scenario_metadata",
        "maps_to": "guyton1972_pulmonary_oxygen_intake_scenario.scenario_metadata"
      },
      {
        "name": "state",
        "maps_to": "guyton1972_pulmonary_oxygen_intake_core.state"
      },
      {
        "name": "run_summary",
        "maps_to": "guyton1972_pulmonary_oxygen_intake_viz.run_summary"
      }
    ]
  },
  "title": "Guyton1972 Pulmonary Oxygen Intake Lab",
  "models": [
    {
      "path": "owned/models/guyton1972_pulmonary_oxygen_intake_scenario",
      "alias": "guyton1972_pulmonary_oxygen_intake_scenario",
      "parameters": {
        "schedule": {
          "oxygen_demand": {
            "unit": "dimensionless",
            "label": "oxygen demand",
            "active": true,
            "baseline": 56.8057,
            "recovery": 56.8057,
            "challenge": 28.40285,
            "description": "Scenario-controlled oxygen demand value."
          },
          "ambient_oxygen": {
            "unit": "dimensionless",
            "label": "ambient oxygen",
            "active": false,
            "baseline": 150,
            "recovery": 150,
            "challenge": 150,
            "description": "Scenario-controlled ambient oxygen value."
          },
          "pulmonary_blood_flow": {
            "unit": "dimensionless",
            "label": "pulmonary blood flow",
            "active": false,
            "baseline": 4.97838,
            "recovery": 4.97838,
            "challenge": 4.97838,
            "description": "Scenario-controlled pulmonary blood flow value."
          }
        },
        "scenario_name": "Oxygen availability challenge",
        "baseline_until": 150,
        "challenge_until": 450,
        "scenario_description": "Baseline is followed by a oxygen demand challenge and recovery period."
      },
      "provenance": {
        "owned_path": "owned/models/guyton1972_pulmonary_oxygen_intake_scenario"
      }
    },
    {
      "path": "owned/models/guyton1972_pulmonary_oxygen_intake_core",
      "alias": "guyton1972_pulmonary_oxygen_intake_core",
      "parameters": {
        "model_path": "data/MODEL0911047946.xml",
        "integration_step": 1
      },
      "provenance": {
        "owned_path": "owned/models/guyton1972_pulmonary_oxygen_intake_core"
      }
    },
    {
      "path": "owned/models/guyton1972_pulmonary_oxygen_intake_viz",
      "alias": "guyton1972_pulmonary_oxygen_intake_viz",
      "parameters": {
        "lab_title": "Guyton1972 Pulmonary Oxygen Intake",
        "lab_question": "Is pulmonary oxygen uptake sufficient?",
        "integration_step": 1
      },
      "provenance": {
        "owned_path": "owned/models/guyton1972_pulmonary_oxygen_intake_viz"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "guyton1972_pulmonary_oxygen_intake_core.pulmonary_blood_flow"
      ],
      "from": "guyton1972_pulmonary_oxygen_intake_scenario.pulmonary_blood_flow"
    },
    {
      "to": [
        "guyton1972_pulmonary_oxygen_intake_core.oxygen_demand"
      ],
      "from": "guyton1972_pulmonary_oxygen_intake_scenario.oxygen_demand"
    },
    {
      "to": [
        "guyton1972_pulmonary_oxygen_intake_core.ambient_oxygen"
      ],
      "from": "guyton1972_pulmonary_oxygen_intake_scenario.ambient_oxygen"
    },
    {
      "to": [
        "guyton1972_pulmonary_oxygen_intake_viz.scenario_metadata"
      ],
      "from": "guyton1972_pulmonary_oxygen_intake_scenario.scenario_metadata"
    },
    {
      "to": [
        "guyton1972_pulmonary_oxygen_intake_viz.state"
      ],
      "from": "guyton1972_pulmonary_oxygen_intake_core.state"
    },
    {
      "to": [
        "guyton1972_pulmonary_oxygen_intake_viz.species_labels"
      ],
      "from": "guyton1972_pulmonary_oxygen_intake_core.species_labels"
    }
  ],
  "runtime": {
    "duration": 600,
    "initial_inputs": {
      "guyton1972_pulmonary_oxygen_intake_core": {
        "integration_step": 1,
        "initial_conditions": {
          "payload": {}
        },
        "parameter_overrides": {
          "payload": {}
        }
      }
    },
    "communication_step": 1
  },
  "description": "Two-model lab for Guyton1972 Pulmonary Oxygen Intake: a core SBML simulator wired into a dedicated visualization sub-model that turns the raw state into friendly timeseries and a plain-language summary. This a model from the article: Circulation: overall regulation. It can be used to explore cardiac dynamics and compare response patterns across conditions.",
  "schema_version": "2.0"
}

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