Hu2020 Ecoli Translation Lab

{
  "io": {
    "inputs": [],
    "outputs": [
      {
        "name": "elongation_factor_tu",
        "maps_to": "hu2020_ecoli_translation.elongation_factor_tu"
      },
      {
        "name": "elongation_factor_tu_gtp",
        "maps_to": "hu2020_ecoli_translation.elongation_factor_tu_gtp"
      },
      {
        "name": "elongation_factor_ts",
        "maps_to": "hu2020_ecoli_translation.elongation_factor_ts"
      },
      {
        "name": "alanine_trna_pool",
        "maps_to": "hu2020_ecoli_translation.alanine_trna_pool"
      },
      {
        "name": "state",
        "maps_to": "hu2020_ecoli_translation.state"
      },
      {
        "name": "summary",
        "maps_to": "hu2020_ecoli_translation.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "hu2020_ecoli_translation.species_labels"
      }
    ]
  },
  "title": "Hu2020 Ecoli Translation Lab",
  "models": [
    {
      "path": "owned/models/hu2020_ecoli_translation",
      "alias": "hu2020_ecoli_translation",
      "parameters": {
        "model_path": "data/MODEL2006210001.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/hu2020_ecoli_translation"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.hu2020_ecoli_translation_elongation_factor_tu"
      ],
      "from": "hu2020_ecoli_translation.elongation_factor_tu"
    },
    {
      "to": [
        "visualisation.hu2020_ecoli_translation_elongation_factor_tu_gtp"
      ],
      "from": "hu2020_ecoli_translation.elongation_factor_tu_gtp"
    },
    {
      "to": [
        "visualisation.hu2020_ecoli_translation_elongation_factor_ts"
      ],
      "from": "hu2020_ecoli_translation.elongation_factor_ts"
    },
    {
      "to": [
        "visualisation.hu2020_ecoli_translation_alanine_trna_pool"
      ],
      "from": "hu2020_ecoli_translation.alanine_trna_pool"
    },
    {
      "to": [
        "visualisation.hu2020_ecoli_translation_state"
      ],
      "from": "hu2020_ecoli_translation.state"
    },
    {
      "to": [
        "visualisation.hu2020_ecoli_translation_summary"
      ],
      "from": "hu2020_ecoli_translation.summary"
    },
    {
      "to": [
        "visualisation.hu2020_ecoli_translation_species_labels"
      ],
      "from": "hu2020_ecoli_translation.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "E. coli translation model. This translation model consists of 274 biochemical reactions, including 119 reactions with non-linear kinetics. This mechanistic model accounts for the concentrations of mRNA, the ribosome, the differ.",
  "schema_version": "2.0"
}