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Nelson1995 Hiv1therapy Divadministraion Modelb Lab

About lab

Nelson1995 Hiv1therapy Divadministraion Modelb

This Biosimulant lab wraps Nelson1995 Hiv1therapy Divadministraion Modelb as a runnable systems biology model with a companion visualization module. This a model from the article: Modeling defective interfering virus therapy for AIDS: conditions for DIVsurvival. It can be used to explore the configured dynamics and compare scenario outcomes across configurations.

What You'll See

The lab asks: Which infection or population states dominate the simulated trajectory? Source model: Nelson1995_HIV1therapy_DIVadministraion_ModelB. It runs for 1.0 time units with a communication step of 0.1. The run uses the model defaults declared by the curated SBML wrapper. The generated visualizations focus on V, T D2, T D1, T 2, T 1, and D Ode, combining trajectory, endpoint-comparison, and summary-table views from one completed dark-mode run.

In this captured run, D Ode moved from 0 to 3.52e-05 across 1.0 simulation windows.

Output Visualizations

Nelson1995 Hiv1therapy Divadministraion Modelb - run interpretation

Summary table for Nelson1995 Hiv1therapy Divadministraion Modelb, reporting the scientific question, observed answer, dominant module, and caveat.

Nelson1995 Hiv1therapy Divadministraion Modelb - timeseries visualization

Trajectories of D Ode, T 1, T 2, V, T D2, and T D1 across the 1.0 simulation. In this run D Ode climbed from 0 to 3.52e-05 — the largest movements among the focused observables.

Nelson1995 Hiv1therapy Divadministraion Modelb - excursions bar

Largest-excursion ranking of the focused observables — the absolute movement magnitude during the run. Top 3: D Ode = 3.52e-05, T 1 = 8.6e-06, T 2 = 8.18e-08.

Nelson1995 Hiv1therapy Divadministraion Modelb - endpoint snapshot bar

Endpoint snapshot of the focused observables — final values from the captured run. Top 3 by value: D Ode = 3.52e-05, T 1 = 8.6e-06, T 2 = 8.18e-08.

Nelson1995 Hiv1therapy Divadministraion Modelb - visualization

Visualization card from the Nelson1995 Hiv1therapy Divadministraion Modelb dark-mode run.

Model Context

  • Core model: models/core
  • Visualization model: models/visualisation
  • Standard: other
  • Upstream source: biomodels_ebi:MODEL1006230033
  • License: CC0

Inputs

InputMaps ToDefaultNotes
Initial Model State Vsystemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.initial_model_state_vSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol V_.
Initial T D2systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.initial_t_d2Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol T_D2.
Initial T D1systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.initial_t_d1Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol T_D1.
Initial Model State T 2systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.initial_model_state_t_2Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol T_2.
Initial Model State T 1systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.initial_model_state_t_1Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol T_1.
Initial D Odesystemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.initial_d_odeSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol D_ode.

Outputs

OutputMaps ToRole
statesystemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.stateAvailable to the visualization model and downstream workflows.
summarysystemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.summaryAvailable to the visualization model and downstream workflows.
species_labelssystemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.species_labelsAvailable to the visualization model and downstream workflows.
model_state_vsystemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.model_state_vAvailable to the visualization model and downstream workflows.
t_d2systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.t_d2Available to the visualization model and downstream workflows.
t_d1systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.t_d1Available to the visualization model and downstream workflows.
t_2systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.t_2Available to the visualization model and downstream workflows.
t_1systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.t_1Available to the visualization model and downstream workflows.
d_odesystemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.d_odeAvailable to the visualization model and downstream workflows.

Runtime

  • Duration: 1.0
  • Communication step: 0.1

Running Locally

biosimulant labs serve

This a model from the article: Modeling defective interfering virus therapy for AIDS: conditions for DIVsurvival. It can be used to explore systemsbiology nelson1995 hiv1therapy divadministraion modelb model1006230033 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagenelson1995-hiv1therapy-divadministraion-modelb-lab
Created2026-05-17
Updated2026-05-17
epidemiologypharmacologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_v",
        "label": "Initial Model State V",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.initial_model_state_v",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `V_`."
      },
      {
        "name": "initial_t_d2",
        "label": "Initial T D2",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.initial_t_d2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `T_D2`."
      },
      {
        "name": "initial_t_d1",
        "label": "Initial T D1",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.initial_t_d1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `T_D1`."
      },
      {
        "name": "initial_model_state_t_2",
        "label": "Initial Model State T 2",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.initial_model_state_t_2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `T_2`."
      },
      {
        "name": "initial_model_state_t_1",
        "label": "Initial Model State T 1",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.initial_model_state_t_1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `T_1`."
      },
      {
        "name": "initial_d_ode",
        "label": "Initial D Ode",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.initial_d_ode",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `D_ode`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.species_labels"
      },
      {
        "name": "model_state_v",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.model_state_v"
      },
      {
        "name": "t_d2",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.t_d2"
      },
      {
        "name": "t_d1",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.t_d1"
      },
      {
        "name": "t_2",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.t_2"
      },
      {
        "name": "t_1",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.t_1"
      },
      {
        "name": "d_ode",
        "maps_to": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.d_ode"
      }
    ]
  },
  "tags": [
    "epidemiology",
    "pharmacology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Nelson1995 Hiv1therapy Divadministraion Modelb Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model",
      "alias": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model_state"
      ],
      "from": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model_summary"
      ],
      "from": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model_species_labels"
      ],
      "from": "systemsbiology_sbml_nelson1995_hiv1therapy_divadministraion_modelb_model1006230033_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Modeling defective interfering virus therapy for AIDS: conditions for DIVsurvival. It can be used to explore systemsbiology nelson1995 hiv1therapy divadministraion modelb model1006230033 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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