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Rovers1995 Photsynthetic Oscillations Lab

About lab

This is the model described in the article: Photosynthetic oscillations and the interdependence of photophosphorylation and electron transport as studied by a mathematical model. It can be used to explore systemsbiology rovers1995 photsynthetic oscillations BioModels0000000292 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagerovers1995-photsynthetic-oscillations-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_nadp_super",
        "label": "Initial Nadp Super",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.initial_nadp_super",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADP`."
      },
      {
        "name": "initial_model_state_adp",
        "label": "Initial Model State ADP",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.initial_model_state_adp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ADP`."
      },
      {
        "name": "initial_nadph",
        "label": "Initial Nadph",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.initial_nadph",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADPH`."
      },
      {
        "name": "initial_model_state_atp",
        "label": "Initial Model State ATP",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.initial_model_state_atp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATP`."
      },
      {
        "name": "initial_model_state_x",
        "label": "Initial Model State X",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.initial_model_state_x",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `X`."
      },
      {
        "name": "initial_model_state_y",
        "label": "Initial Model State Y",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.initial_model_state_y",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Y`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.species_labels"
      },
      {
        "name": "nadp_super",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.nadp_super"
      },
      {
        "name": "adp",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.adp"
      },
      {
        "name": "nadph",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.nadph"
      },
      {
        "name": "atp",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.atp"
      },
      {
        "name": "model_state_x",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.model_state_x"
      },
      {
        "name": "model_state_y",
        "maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.model_state_y"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Rovers1995 Photsynthetic Oscillations Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model",
      "alias": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model_state"
      ],
      "from": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model_summary"
      ],
      "from": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model_species_labels"
      ],
      "from": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This is the model described in the article: Photosynthetic oscillations and the interdependence of photophosphorylation and electron transport as studied by a mathematical model. It can be used to explore systemsbiology rovers1995 photsynthetic oscillations BioModels0000000292 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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