About lab
SBML level 2 code generated for the JWS Online project by Jacky Snoep using PySCeS Run this model online at http://jjj.biochem.sun.ac.za To cite JWS Online please refer to: Olivier, B.G. It can be used to explore systemsbiology rohwer2000 phosphotransferase system BioModels0000000038 dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagerohwer2000-phosphotransferase-system-lab
Created2026-05-17
Updated2026-05-17
generegulationsignalingsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_pep",
"label": "Initial Model State Pep",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.initial_model_state_pep",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PEP`."
},
{
"name": "initial_model_state_pyr",
"label": "Initial Model State Pyr",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.initial_model_state_pyr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pyr`."
},
{
"name": "initial_model_state_glc",
"label": "Initial Model State Glc",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.initial_model_state_glc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Glc`."
},
{
"name": "initial_glc_p",
"label": "Initial Glc P",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.initial_glc_p",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `GlcP`."
},
{
"name": "initial_h_pr_p",
"label": "Initial H Pr P",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.initial_h_pr_p",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `HPrP`."
},
{
"name": "initial_h_pr",
"label": "Initial H Pr",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.initial_h_pr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `HPr`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.species_labels"
},
{
"name": "pep",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.pep"
},
{
"name": "pyr",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.pyr"
},
{
"name": "glc",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.glc"
},
{
"name": "glc_p",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.glc_p"
},
{
"name": "h_pr_p",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.h_pr_p"
},
{
"name": "h_pr",
"maps_to": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.h_pr"
}
]
},
"tags": [
"generegulation",
"signaling",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Rohwer2000 Phosphotransferase System Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model",
"alias": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model_state"
],
"from": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model_summary"
],
"from": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model_species_labels"
],
"from": "systemsbiology_sbml_rohwer2000_phosphotransferase_system_biomd0000000038_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "SBML level 2 code generated for the JWS Online project by Jacky Snoep using PySCeS Run this model online at http://jjj.biochem.sun.ac.za To cite JWS Online please refer to: Olivier, B.G. It can be used to explore systemsbiology rohwer2000 phosphotransferase system BioModels0000000038 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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