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A model of yeast cell-cycle regulation based on multisite phosphorylation_1_1_1 Lab

About lab

Clean Biosimulant lab for cell-cycle regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagea-model-of-yeast-cell-cycle-regulation-based-on-multisite-phosph
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicell-cycle-signalingvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cdc14_phosphatase",
        "label": "Initial Cdc14 phosphatase",
        "maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.initial_cdc14_phosphatase",
        "description": "Initial level of Cdc14 phosphatase. Maps to SBML symbol `Cdc14`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_cdh1_cell_cycle_regulator",
        "label": "Initial Cdh1 cell-cycle regulator",
        "maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.initial_cdh1_cell_cycle_regulator",
        "description": "Initial level of Cdh1 cell-cycle regulator. Maps to SBML symbol `Cdh1`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_cdh1p1",
        "label": "Initial Cdh1p1",
        "maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.initial_cdh1p1",
        "description": "Initial level of Cdh1p1. Maps to SBML symbol `Cdh1P1`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "cln3_cyclin",
        "label": "Cln3 cyclin",
        "maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.cln3_cyclin",
        "description": "Cln3 cyclin. Maps to SBML symbol `Cln3` and is emitted in native SBML units."
      },
      {
        "name": "mitotic_clb_cyclin",
        "label": "mitotic Clb cyclin",
        "maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.mitotic_clb_cyclin",
        "description": "mitotic Clb cyclin. Maps to SBML symbol `ClbM` and is emitted in native SBML units."
      },
      {
        "name": "s_phase_clb_cyclin",
        "label": "S-phase Clb cyclin",
        "maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.s_phase_clb_cyclin",
        "description": "S-phase Clb cyclin. Maps to SBML symbol `ClbS` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "cell-cycle-signaling"
  ],
  "title": "A model of yeast cell-cycle regulation based on multisite phosphorylation_1_1_1 Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model",
      "alias": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model_state"
      ],
      "from": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model_summary"
      ],
      "from": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model_species_labels"
      ],
      "from": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for cell-cycle regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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