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Rodriguez Caso2006 Polyamine Metabolism Lab

About lab

SBML creators: Armando Reyes-Palomares * , Carlos Rodríguez-Caso +, Raul Montañez * , Marta Cascante $, Francisca Sánchez-Jiménez * , Miguel A. Medina * * ProCel Group, Department of Molecular Biology.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagerodriguez-caso2006-polyamine-metabolism-lab
Created2026-05-17
Updated2026-05-17
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_l_ornithine",
        "label": "Initial L Ornithine",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.initial_l_ornithine",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ORN`."
      },
      {
        "name": "initial_methionine",
        "label": "Initial Methionine",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.initial_methionine",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Met`."
      },
      {
        "name": "initial_acetyl_co_a",
        "label": "Initial Acetyl Co A",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.initial_acetyl_co_a",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AcCoA`."
      },
      {
        "name": "initial_s_adenosyl_l_methionine",
        "label": "Initial S Adenosyl L Methionine",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.initial_s_adenosyl_l_methionine",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `SAM`."
      },
      {
        "name": "initial_n1_acetylspermine",
        "label": "Initial N1 Acetylspermine",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.initial_n1_acetylspermine",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `aS`."
      },
      {
        "name": "initial_n1_acetylspermidine",
        "label": "Initial N1 Acetylspermidine",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.initial_n1_acetylspermidine",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `aD`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.species_labels"
      },
      {
        "name": "l_ornithine",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.l_ornithine"
      },
      {
        "name": "methionine",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.methionine"
      },
      {
        "name": "acetyl_co_a",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.acetyl_co_a"
      },
      {
        "name": "s_adenosyl_l_methionine",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.s_adenosyl_l_methionine"
      },
      {
        "name": "n1_acetylspermine",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.n1_acetylspermine"
      },
      {
        "name": "n1_acetylspermidine",
        "maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.n1_acetylspermidine"
      }
    ]
  },
  "tags": [
    "metabolism",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Rodriguez Caso2006 Polyamine Metabolism Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model",
      "alias": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model_state"
      ],
      "from": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model_summary"
      ],
      "from": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model_species_labels"
      ],
      "from": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "SBML creators: Armando Reyes-Palomares * , Carlos Rodríguez-Caso +, Raul Montañez * , Marta Cascante $, Francisca Sánchez-Jiménez * , Miguel A. Medina * * ProCel Group, Department of Molecular Biology.",
  "schema_version": "2.0"
}

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