About lab
SBML creators: Armando Reyes-Palomares * , Carlos Rodríguez-Caso +, Raul Montañez * , Marta Cascante $, Francisca Sánchez-Jiménez * , Miguel A. Medina * * ProCel Group, Department of Molecular Biology.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagerodriguez-caso2006-polyamine-metabolism-lab
Created2026-05-17
Updated2026-05-17
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_l_ornithine",
"label": "Initial L Ornithine",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.initial_l_ornithine",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ORN`."
},
{
"name": "initial_methionine",
"label": "Initial Methionine",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.initial_methionine",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Met`."
},
{
"name": "initial_acetyl_co_a",
"label": "Initial Acetyl Co A",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.initial_acetyl_co_a",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AcCoA`."
},
{
"name": "initial_s_adenosyl_l_methionine",
"label": "Initial S Adenosyl L Methionine",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.initial_s_adenosyl_l_methionine",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `SAM`."
},
{
"name": "initial_n1_acetylspermine",
"label": "Initial N1 Acetylspermine",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.initial_n1_acetylspermine",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `aS`."
},
{
"name": "initial_n1_acetylspermidine",
"label": "Initial N1 Acetylspermidine",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.initial_n1_acetylspermidine",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `aD`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.species_labels"
},
{
"name": "l_ornithine",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.l_ornithine"
},
{
"name": "methionine",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.methionine"
},
{
"name": "acetyl_co_a",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.acetyl_co_a"
},
{
"name": "s_adenosyl_l_methionine",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.s_adenosyl_l_methionine"
},
{
"name": "n1_acetylspermine",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.n1_acetylspermine"
},
{
"name": "n1_acetylspermidine",
"maps_to": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.n1_acetylspermidine"
}
]
},
"tags": [
"metabolism",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Rodriguez Caso2006 Polyamine Metabolism Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model",
"alias": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model_state"
],
"from": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model_summary"
],
"from": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model_species_labels"
],
"from": "systemsbiology_sbml_rodriguez_caso2006_polyamine_metabolism_biomd0000000190_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "SBML creators: Armando Reyes-Palomares * , Carlos Rodríguez-Caso +, Raul Montañez * , Marta Cascante $, Francisca Sánchez-Jiménez * , Miguel A. Medina * * ProCel Group, Department of Molecular Biology.",
"schema_version": "2.0"
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