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Swanson2001 - Mathematical Dynamics Serum Prostate Specific Antigen Lab

About lab

Source-faithful physiology lab for Swanson, True, Lin, Buhler, Vessella, Murray, 2001. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageswanson2001-mathematical-dynamics-serum-prostate-specific-antige
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_serum_psa_dynamics_p",
        "label": "Initial Serum Psa Dynamics P",
        "maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.initial_serum_psa_dynamics_p",
        "description": "Initial value for Serum Psa Dynamics P. Maps to source symbol `p`. Units: ng_per_mm3. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "ng_per_mm3"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.variable_labels"
      },
      {
        "name": "serum_psa_dynamics_p",
        "label": "Serum Psa Dynamics P",
        "maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.serum_psa_dynamics_p",
        "description": "Serum Psa Dynamics P. Maps to source symbol `p`. Units: ng_per_mm3. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "beta_c",
        "label": "Beta C",
        "maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.beta_c",
        "description": "Beta C. Maps to source symbol `beta_c`. Units: ng_per_mm3_per_day. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "beta_h",
        "label": "Beta H",
        "maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.beta_h",
        "description": "Beta H. Maps to source symbol `beta_h`. Units: ng_per_mm3_per_day. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "gamma",
        "label": "Gamma",
        "maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.gamma",
        "description": "Gamma. Maps to source symbol `gamma`. Units: per_day. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "rho",
        "label": "Rho",
        "maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.rho",
        "description": "Rho. Maps to source symbol `rho`. Units: per_day. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "serum_psa_dynamics_vc",
        "label": "Serum Psa Dynamics Vc",
        "maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.serum_psa_dynamics_vc",
        "description": "Serum Psa Dynamics Vc. Maps to source symbol `Vc`. Units: mm3. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Swanson2001 - Mathematical Dynamics Serum Prostate Specific Antigen Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model",
      "alias": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model",
      "parameters": {
        "model_path": "data/swanson_true_lin_buhler_vessella_murray_2001.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model_state"
      ],
      "from": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model_summary"
      ],
      "from": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model_trajectory"
      ],
      "from": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model_variable_labels"
      ],
      "from": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Swanson, True, Lin, Buhler, Vessella, Murray, 2001. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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