About lab
This a model from the article: A simplified model for mitochondrial ATP production. Bertram R, Gram Pedersen M, Luciani DS, Sherman A.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebertram2006-atpproduction-mitochondrial-lab
Created2026-05-17
Updated2026-05-17
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_cam",
"label": "Initial Model State Cam",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.initial_model_state_cam",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Cam`."
},
{
"name": "initial_ps_im",
"label": "Initial Ps Im",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.initial_ps_im",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PSIm`."
},
{
"name": "initial_nad_hm",
"label": "Initial Nad Hm",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.initial_nad_hm",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADHm`."
},
{
"name": "initial_model_state_fbp",
"label": "Initial Model State Fbp",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.initial_model_state_fbp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FBP`."
},
{
"name": "initial_ad_pm",
"label": "Initial Ad Pm",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.initial_ad_pm",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ADPm`."
},
{
"name": "initial_ad_pc",
"label": "Initial Ad Pc",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.initial_ad_pc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ADPc`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.species_labels"
},
{
"name": "cam",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.cam"
},
{
"name": "ps_im",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.ps_im"
},
{
"name": "nad_hm",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.nad_hm"
},
{
"name": "fbp",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.fbp"
},
{
"name": "ad_pm",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.ad_pm"
},
{
"name": "ad_pc",
"maps_to": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.ad_pc"
}
]
},
"tags": [
"metabolism",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Bertram2006 Atpproduction Mitochondrial Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model",
"alias": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model_state"
],
"from": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model_summary"
],
"from": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model_species_labels"
],
"from": "systemsbiology_sbml_bertram2006_atpproduction_mitochondrial_model1006230114_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This a model from the article: A simplified model for mitochondrial ATP production. Bertram R, Gram Pedersen M, Luciani DS, Sherman A.",
"schema_version": "2.0"
}Sign in to start your own run. Public-lab history stays visible here.
Select a run from History to view its results.