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Ung2008 Egfr Endocytosis Lab

About lab

Model reproduces the various plots in the publication for 'Control' concentrations. It can be used to explore systemsbiology ung2008 egfr endocytosis BioModels0000000205 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageung2008-egfr-endocytosis-lab
Created2026-05-17
Updated2026-05-17
cellcyclesignalingsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_pro_egfr",
        "label": "Initial Pro EGFR",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.initial_pro_egfr",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_122`."
      },
      {
        "name": "initial_model_state_shc",
        "label": "Initial Model State Shc",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.initial_model_state_shc",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_7`."
      },
      {
        "name": "initial_m_pase",
        "label": "Initial M Pase",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.initial_m_pase",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_125`."
      },
      {
        "name": "initial_grb2",
        "label": "Initial Grb2",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.initial_grb2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_12`."
      },
      {
        "name": "initial_cbl_cin85",
        "label": "Initial Cbl Cin85",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.initial_cbl_cin85",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_114`."
      },
      {
        "name": "initial_model_state_rok",
        "label": "Initial Model State Rok",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.initial_model_state_rok",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_105`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.species_labels"
      },
      {
        "name": "pro_egfr",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.pro_egfr"
      },
      {
        "name": "shc",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.shc"
      },
      {
        "name": "m_pase",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.m_pase"
      },
      {
        "name": "grb2",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.grb2"
      },
      {
        "name": "cbl_cin85",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.cbl_cin85"
      },
      {
        "name": "rok",
        "maps_to": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.rok"
      }
    ]
  },
  "tags": [
    "cellcycle",
    "signaling",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Ung2008 Egfr Endocytosis Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model",
      "alias": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model_state"
      ],
      "from": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model_summary"
      ],
      "from": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model_species_labels"
      ],
      "from": "systemsbiology_sbml_ung2008_egfr_endocytosis_biomd0000000205_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Model reproduces the various plots in the publication for 'Control' concentrations. It can be used to explore systemsbiology ung2008 egfr endocytosis BioModels0000000205 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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