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Tyson1991 - John Cell Division Cycle Lab

About lab

Source-faithful physiology lab for Tyson, 1991. Public controls and outputs are mapped to real source symbols for cell-cycle dynamics.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagetyson1991-john-cell-division-cycle-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_active_mpf",
        "label": "Initial Active Mpf",
        "maps_to": "physiology_cellml_tyson_1991_tyson1991_model.initial_active_mpf",
        "description": "Initial value for Active Mpf. Maps to source symbol `M`. Units: millimolar. Naming evidence: source metadata names `M` as `active MPF`.",
        "accepted_units": [
          "millimolar"
        ]
      },
      {
        "name": "initial_cdc2",
        "label": "Initial Cdc2",
        "maps_to": "physiology_cellml_tyson_1991_tyson1991_model.initial_cdc2",
        "description": "Initial value for Cdc2. Maps to source symbol `C2`. Units: millimolar. Naming evidence: source metadata names `C2` as `cdc2`.",
        "accepted_units": [
          "millimolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_tyson_1991_tyson1991_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_tyson_1991_tyson1991_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_tyson_1991_tyson1991_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_tyson_1991_tyson1991_model.variable_labels"
      },
      {
        "name": "active_mpf",
        "label": "Active Mpf",
        "maps_to": "physiology_cellml_tyson_1991_tyson1991_model.active_mpf",
        "description": "Active Mpf. Maps to source symbol `M`. Units: millimolar. Naming evidence: source metadata names `M` as `active MPF`."
      },
      {
        "name": "cdc2",
        "label": "Cdc2",
        "maps_to": "physiology_cellml_tyson_1991_tyson1991_model.cdc2",
        "description": "Cdc2. Maps to source symbol `C2`. Units: millimolar. Naming evidence: source metadata names `C2` as `cdc2`."
      },
      {
        "name": "cdc2_p",
        "label": "Cdc2 P",
        "maps_to": "physiology_cellml_tyson_1991_tyson1991_model.cdc2_p",
        "description": "Cdc2 P. Maps to source symbol `CP`. Units: millimolar. Naming evidence: source metadata names `CP` as `cdc2-P`."
      },
      {
        "name": "cyclin",
        "label": "Cyclin",
        "maps_to": "physiology_cellml_tyson_1991_tyson1991_model.cyclin",
        "description": "Cyclin. Maps to source symbol `Y`. Units: millimolar. Naming evidence: source metadata names `Y` as `cyclin`."
      },
      {
        "name": "cyclin_p",
        "label": "Cyclin P",
        "maps_to": "physiology_cellml_tyson_1991_tyson1991_model.cyclin_p",
        "description": "Cyclin P. Maps to source symbol `YP`. Units: millimolar. Naming evidence: source metadata names `YP` as `cyclin-P`."
      },
      {
        "name": "pre_mpf",
        "label": "Pre Mpf",
        "maps_to": "physiology_cellml_tyson_1991_tyson1991_model.pre_mpf",
        "description": "Pre Mpf. Maps to source symbol `pM`. Units: millimolar. Naming evidence: source metadata names `pM` as `preMPF`."
      }
    ]
  },
  "title": "Tyson1991 - John Cell Division Cycle Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_tyson_1991_tyson1991_model",
      "alias": "physiology_cellml_tyson_1991_tyson1991_model",
      "parameters": {
        "model_path": "data/tyson_1991.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_tyson_1991_tyson1991_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_tyson_1991_tyson1991_model_state"
      ],
      "from": "physiology_cellml_tyson_1991_tyson1991_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_tyson_1991_tyson1991_model_summary"
      ],
      "from": "physiology_cellml_tyson_1991_tyson1991_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_tyson_1991_tyson1991_model_trajectory"
      ],
      "from": "physiology_cellml_tyson_1991_tyson1991_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_tyson_1991_tyson1991_model_variable_labels"
      ],
      "from": "physiology_cellml_tyson_1991_tyson1991_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Tyson, 1991. Public controls and outputs are mapped to real source symbols for cell-cycle dynamics.",
  "schema_version": "2.0"
}

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