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Physiome 5c9 - Skeletal Muscle Cramp Its Reversal Lab

About lab

Source-faithful physiology lab for Model of skeletal muscle cramp and its reversal. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-5c9-skeletal-muscle-cramp-its-reversal-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_intracellular_sodium",
        "label": "Initial Intracellular Sodium",
        "maps_to": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.initial_intracellular_sodium",
        "description": "Initial value for Intracellular Sodium. Maps to source symbol `Na_i`. Units: milliM. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "milliM"
        ]
      },
      {
        "name": "initial_intracellular_potassium",
        "label": "Initial Intracellular Potassium",
        "maps_to": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.initial_intracellular_potassium",
        "description": "Initial value for Intracellular Potassium. Maps to source symbol `K_i`. Units: milliM. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "milliM"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V_m`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current",
        "label": "Sodium Current",
        "maps_to": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.sodium_current",
        "description": "Sodium Current. Maps to source symbol `I_NaK`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_na",
        "label": "Sodium Current I Na",
        "maps_to": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.sodium_current_i_na",
        "description": "Sodium Current I Na. Maps to source symbol `I_Na`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_na_k_bar",
        "label": "Sodium Current I Na K Bar",
        "maps_to": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.sodium_current_i_na_k_bar",
        "description": "Sodium Current I Na K Bar. Maps to source symbol `I_NaK_bar`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_na_k_bar_t",
        "label": "Sodium Current I Na K Bar T",
        "maps_to": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.sodium_current_i_na_k_bar_t",
        "description": "Sodium Current I Na K Bar T. Maps to source symbol `I_NaK_bar_t`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_na_k_t",
        "label": "Sodium Current I Na K T",
        "maps_to": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.sodium_current_i_na_k_t",
        "description": "Sodium Current I Na K T. Maps to source symbol `I_NaK_t`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome 5c9 - Skeletal Muscle Cramp Its Reversal Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model",
      "alias": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model",
      "parameters": {
        "model_path": "data/shorten_ocallaghan_davidson_soboleva_2007_wangICaECacalcb_ICalINaCaIbCaIpCainCaODEOKNoIbCaFullwithfK",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model_state"
      ],
      "from": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model_summary"
      ],
      "from": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model_trajectory"
      ],
      "from": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model_variable_labels"
      ],
      "from": "physiology_cellml_model_of_skeletal_muscle_cramp_and_its_reversal_5c9_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Model of skeletal muscle cramp and its reversal. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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