About lab
Clean Biosimulant lab for developmental and growth-control signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagelee2003-roles-of-apc-and-axin-in-wnt-pathway-without-regulatory
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebiwntvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_source_defined_w_state",
"label": "Initial source-defined W state",
"maps_to": "signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model.initial_source_defined_w_state",
"description": "Initial level of source-defined W state. Maps to SBML symbol `W`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "b_catenin_apc_axin_gsk3",
"label": "B Catenin APC Axin GSK3",
"maps_to": "signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model.b_catenin_apc_axin_gsk3",
"description": "B Catenin APC Axin GSK3. Maps to SBML symbol `B_catenin_APC__axin__GSK3` and is emitted in native SBML units."
},
{
"name": "b_catenin_apc_axin_gsk3_2",
"label": "B Catenin APC Axin GSK3",
"maps_to": "signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model.b_catenin_apc_axin_gsk3_2",
"description": "B Catenin APC Axin GSK3. Maps to SBML symbol `B_catenin__APC__axin__GSK3` and is emitted in native SBML units."
},
{
"name": "b_catenin",
"label": "B Catenin",
"maps_to": "signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model.b_catenin",
"description": "B Catenin. Maps to SBML symbol `B_catenin` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"wnt"
],
"title": "Lee2003 - Roles of APC and Axin in Wnt Pathway (without regulatory loop) Lab",
"models": [
{
"path": "owned/models/signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model",
"alias": "signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model_state"
],
"from": "signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model.state"
},
{
"to": [
"visualisation.signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model_summary"
],
"from": "signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model_species_labels"
],
"from": "signaling_sbml_lee2003_roles_of_apc_and_axin_in_wnt_pathway_wit_biomd0000000658_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for developmental and growth-control signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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