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Chen2009 - ErbB Signaling Lab

About lab

Clean Biosimulant lab for systems signaling model: Chen2009 - ErbB Signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagechen2009-erbb-signaling-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_egf",
        "label": "Initial EGF",
        "maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.initial_egf",
        "description": "Initial level of EGF. Maps to SBML symbol `c1`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_heregulin",
        "label": "Initial heregulin",
        "maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.initial_heregulin",
        "description": "Initial level of heregulin. Maps to SBML symbol `c515`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_heregulin_2",
        "label": "Initial heregulin",
        "maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.initial_heregulin_2",
        "description": "Initial level of heregulin. Maps to SBML symbol `c514`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "source_2_egf_erb_b1_atp_full_active",
        "label": "2 EGF Erb B1 ATP Full active",
        "maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.source_2_egf_erb_b1_atp_full_active",
        "description": "2 EGF Erb B1 ATP Full active. Maps to SBML symbol `c116` and is emitted in native SBML units."
      },
      {
        "name": "source_2_egf_erb_b1_p_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gdp",
        "label": "2 EGF Erb B1 P GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GDP",
        "maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.source_2_egf_erb_b1_p_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gdp",
        "description": "2 EGF Erb B1 P GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GDP. Maps to SBML symbol `c27` and is emitted in native SBML units."
      },
      {
        "name": "source_2_egf_erb_b1_p_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gdp_c_pp",
        "label": "2 EGF Erb B1 P GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GDP C PP",
        "maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.source_2_egf_erb_b1_p_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gdp_c_pp",
        "description": "2 EGF Erb B1 P GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GDP C PP. Maps to SBML symbol `c89` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "cellular-signaling"
  ],
  "title": "Chen2009 - ErbB Signaling Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model",
      "alias": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model_state"
      ],
      "from": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model_summary"
      ],
      "from": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model_species_labels"
      ],
      "from": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Chen2009 - ErbB Signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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