About lab
Clean Biosimulant lab for systems signaling model: Chen2009 - ErbB Signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagechen2009-erbb-signaling-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_egf",
"label": "Initial EGF",
"maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.initial_egf",
"description": "Initial level of EGF. Maps to SBML symbol `c1`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_heregulin",
"label": "Initial heregulin",
"maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.initial_heregulin",
"description": "Initial level of heregulin. Maps to SBML symbol `c515`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_heregulin_2",
"label": "Initial heregulin",
"maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.initial_heregulin_2",
"description": "Initial level of heregulin. Maps to SBML symbol `c514`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "source_2_egf_erb_b1_atp_full_active",
"label": "2 EGF Erb B1 ATP Full active",
"maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.source_2_egf_erb_b1_atp_full_active",
"description": "2 EGF Erb B1 ATP Full active. Maps to SBML symbol `c116` and is emitted in native SBML units."
},
{
"name": "source_2_egf_erb_b1_p_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gdp",
"label": "2 EGF Erb B1 P GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GDP",
"maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.source_2_egf_erb_b1_p_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gdp",
"description": "2 EGF Erb B1 P GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GDP. Maps to SBML symbol `c27` and is emitted in native SBML units."
},
{
"name": "source_2_egf_erb_b1_p_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gdp_c_pp",
"label": "2 EGF Erb B1 P GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GDP C PP",
"maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.source_2_egf_erb_b1_p_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gdp_c_pp",
"description": "2 EGF Erb B1 P GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GDP C PP. Maps to SBML symbol `c89` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Chen2009 - ErbB Signaling Lab",
"models": [
{
"path": "owned/models/signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model",
"alias": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model_state"
],
"from": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.state"
},
{
"to": [
"visualisation.signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model_summary"
],
"from": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model_species_labels"
],
"from": "signaling_sbml_chen2009_erbb_signaling_biomd0000000255_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Chen2009 - ErbB Signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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