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Physiome 47d - Example Bond Graph Lab

About lab

Source-faithful physiology lab for Example bond graph models. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-47d-example-bond-graph-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_main_q1",
        "label": "Initial Main Q1",
        "maps_to": "physiology_cellml_example_bond_graph_models_47d_model.initial_main_q1",
        "description": "Initial value for Main Q1. Maps to source symbol `q1`. Units: coulomb. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "coulomb"
        ]
      },
      {
        "name": "initial_main_q2",
        "label": "Initial Main Q2",
        "maps_to": "physiology_cellml_example_bond_graph_models_47d_model.initial_main_q2",
        "description": "Initial value for Main Q2. Maps to source symbol `q2`. Units: coulomb. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "coulomb"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_example_bond_graph_models_47d_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_example_bond_graph_models_47d_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_example_bond_graph_models_47d_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_example_bond_graph_models_47d_model.variable_labels"
      },
      {
        "name": "main_q1",
        "label": "Main Q1",
        "maps_to": "physiology_cellml_example_bond_graph_models_47d_model.main_q1",
        "description": "Main Q1. Maps to source symbol `q1`. Units: coulomb. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "main_q2",
        "label": "Main Q2",
        "maps_to": "physiology_cellml_example_bond_graph_models_47d_model.main_q2",
        "description": "Main Q2. Maps to source symbol `q2`. Units: coulomb. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "main_c1",
        "label": "Main C1",
        "maps_to": "physiology_cellml_example_bond_graph_models_47d_model.main_c1",
        "description": "Main C1. Maps to source symbol `C1`. Units: C2_per_J. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "main_c2",
        "label": "Main C2",
        "maps_to": "physiology_cellml_example_bond_graph_models_47d_model.main_c2",
        "description": "Main C2. Maps to source symbol `C2`. Units: C2_per_J. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "main_r1",
        "label": "Main R1",
        "maps_to": "physiology_cellml_example_bond_graph_models_47d_model.main_r1",
        "description": "Main R1. Maps to source symbol `R1`. Units: Js_per_C2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "main_u1",
        "label": "Main U1",
        "maps_to": "physiology_cellml_example_bond_graph_models_47d_model.main_u1",
        "description": "Main U1. Maps to source symbol `u1`. Units: J_per_C. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome 47d - Example Bond Graph Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_example_bond_graph_models_47d_model",
      "alias": "physiology_cellml_example_bond_graph_models_47d_model",
      "parameters": {
        "model_path": "data/BG_tutorial_model_electrical_1.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_example_bond_graph_models_47d_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_example_bond_graph_models_47d_model_state"
      ],
      "from": "physiology_cellml_example_bond_graph_models_47d_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_example_bond_graph_models_47d_model_summary"
      ],
      "from": "physiology_cellml_example_bond_graph_models_47d_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_example_bond_graph_models_47d_model_trajectory"
      ],
      "from": "physiology_cellml_example_bond_graph_models_47d_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_example_bond_graph_models_47d_model_variable_labels"
      ],
      "from": "physiology_cellml_example_bond_graph_models_47d_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Example bond graph models. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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