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Bertram2008 - Phantom Bursting Mechanism Episodic Bursting Bertramrhoadsc Lab

About lab

Source-faithful physiology lab for Bertram, Rhoads and Cimbora 2008. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagebertram2008-phantom-bursting-mechanism-episodic-bursting-bertram
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      },
      {
        "name": "initial_bursting_activation_gate_n",
        "label": "Initial Bursting Activation Gate N (source n)",
        "maps_to": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.initial_bursting_activation_gate_n",
        "description": "Initial value for Bursting Activation Gate N (source n). Maps to source symbol `n`. Units: dimensionless. Naming evidence: bursting-model context supports a conservative activation-gate label.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_voltage_vm",
        "label": "Membrane Voltage Vm",
        "maps_to": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.membrane_voltage_vm",
        "description": "Membrane Voltage Vm. Maps to source symbol `vm`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_capacitance",
        "label": "Membrane Capacitance",
        "maps_to": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.membrane_capacitance",
        "description": "Membrane Capacitance. Maps to source symbol `Cm`. Units: femtofarad. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "bursting_activation_gate_n",
        "label": "Bursting Activation Gate N (source n)",
        "maps_to": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.bursting_activation_gate_n",
        "description": "Bursting Activation Gate N (source n). Maps to source symbol `n`. Units: dimensionless. Naming evidence: bursting-model context supports a conservative activation-gate label."
      },
      {
        "name": "slow_bursting_gate_s1",
        "label": "Slow Bursting Gate S1 (source s1)",
        "maps_to": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.slow_bursting_gate_s1",
        "description": "Slow Bursting Gate S1 (source s1). Maps to source symbol `s1`. Units: dimensionless. Naming evidence: bursting-model context supports a conservative slow-gate label."
      },
      {
        "name": "slow_bursting_gate_s2",
        "label": "Slow Bursting Gate S2 (source s2)",
        "maps_to": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.slow_bursting_gate_s2",
        "description": "Slow Bursting Gate S2 (source s2). Maps to source symbol `s2`. Units: dimensionless. Naming evidence: bursting-model context supports a conservative slow-gate label."
      }
    ]
  },
  "title": "Bertram2008 - Phantom Bursting Mechanism Episodic Bursting Bertramrhoadsc Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model",
      "alias": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model",
      "parameters": {
        "model_path": "data/bertram_2008.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model_state"
      ],
      "from": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model_summary"
      ],
      "from": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model_trajectory"
      ],
      "from": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model_variable_labels"
      ],
      "from": "physiology_cellml_bertram_rhoads_and_cimbora_2008_bertramrhoadscimbora2008_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Bertram, Rhoads and Cimbora 2008. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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