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Scheidel2016 In Silico Knockout Studies Of Xenophagy Capturing Of Salmo Lab

About lab

Xenophagy, also known as antibacterial autophagy, is a process of capturing and eliminating cytosolic pathogens, like Salmonella. Salmonella is the best-studied model organism for xenophagy.

Runtime

Duration1
Comms Step0.1

Runs

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Metadata

Packagescheidel2016-in-silico-knockout-studies-of-xenophagy-capturing-o
Created2026-05-17
Updated2026-05-17
microbiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

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        "label": "Initial M Torc1inactive",
        "maps_to": "systemsbiology_sbml_scheidel2016_in_silico_knockout_studies_of_xenop_model1904150001_model.initial_m_torc1inactive",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P382`."
      },
      {
        "name": "initial_m_torc1_ulk1comp",
        "label": "Initial M Torc1 Ulk1comp",
        "maps_to": "systemsbiology_sbml_scheidel2016_in_silico_knockout_studies_of_xenop_model1904150001_model.initial_m_torc1_ulk1comp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P384`."
      },
      {
        "name": "initial_m_torc1_ulk1comp_scv",
        "label": "Initial M Torc1 Ulk1comp Scv",
        "maps_to": "systemsbiology_sbml_scheidel2016_in_silico_knockout_studies_of_xenop_model1904150001_model.initial_m_torc1_ulk1comp_scv",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P415`."
      },
      {
        "name": "initial_signal_sc_vdamage",
        "label": "Initial Signal Sc Vdamage",
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        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P400`."
      },
      {
        "name": "initial_signal_autophagy_induction",
        "label": "Initial Signal Autophagy Induction",
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        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P408`."
      },
      {
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        "label": "Initial P62 I",
        "maps_to": "systemsbiology_sbml_scheidel2016_in_silico_knockout_studies_of_xenop_model1904150001_model.initial_p62_i",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P352`."
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        "maps_to": "systemsbiology_sbml_scheidel2016_in_silico_knockout_studies_of_xenop_model1904150001_model.state"
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      },
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        "name": "m_torc1_ulk1comp",
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      },
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      },
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        "maps_to": "systemsbiology_sbml_scheidel2016_in_silico_knockout_studies_of_xenop_model1904150001_model.signal_sc_vdamage"
      },
      {
        "name": "signal_autophagy_induction",
        "maps_to": "systemsbiology_sbml_scheidel2016_in_silico_knockout_studies_of_xenop_model1904150001_model.signal_autophagy_induction"
      },
      {
        "name": "p62_i",
        "maps_to": "systemsbiology_sbml_scheidel2016_in_silico_knockout_studies_of_xenop_model1904150001_model.p62_i"
      }
    ]
  },
  "tags": [
    "microbiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Scheidel2016 In Silico Knockout Studies Of Xenophagy Capturing Of Salmo Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_scheidel2016_in_silico_knockout_studies_of_xenop_model1904150001_model",
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      "provenance": {
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    },
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      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
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    {
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      ],
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    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Xenophagy, also known as antibacterial autophagy, is a process of capturing and eliminating cytosolic pathogens, like Salmonella. Salmonella is the best-studied model organism for xenophagy.",
  "schema_version": "2.0"
}

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