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Passos2010 Dnadamage Cellularsenescence Lab

About lab

This is the model described in: Feedback between p21 and reactive oxygen production is necessary for cell senescence. Passos JF, Nelson G, Wang C, Richter T, Simillion C, Proctor CJ, Miwa S, Olijslage.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagepassos2010-dnadamage-cellularsenescence-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_p53_mrna",
        "label": "Initial P53 MRNA",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.initial_p53_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `p53_mRNA`."
      },
      {
        "name": "initial_mdm2_mrna",
        "label": "Initial Mdm2 MRNA",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.initial_mdm2_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mdm2_mRNA`."
      },
      {
        "name": "initial_p21_mrna",
        "label": "Initial P21 MRNA",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.initial_p21_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `p21_mRNA`."
      },
      {
        "name": "initial_atmi",
        "label": "Initial Atmi",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.initial_atmi",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATMI`."
      },
      {
        "name": "initial_model_state_p38",
        "label": "Initial Model State P38",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.initial_model_state_p38",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `p38`."
      },
      {
        "name": "initial_mdm2_p53",
        "label": "Initial Mdm2 P53",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.initial_mdm2_p53",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mdm2_p53`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.species_labels"
      },
      {
        "name": "p53_mrna",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.p53_mrna"
      },
      {
        "name": "mdm2_mrna",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.mdm2_mrna"
      },
      {
        "name": "p21_mrna",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.p21_mrna"
      },
      {
        "name": "atmi",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.atmi"
      },
      {
        "name": "p38",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.p38"
      },
      {
        "name": "mdm2_p53",
        "maps_to": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.mdm2_p53"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Passos2010 Dnadamage Cellularsenescence Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model",
      "alias": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model_state"
      ],
      "from": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model_summary"
      ],
      "from": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model_species_labels"
      ],
      "from": "systemsbiology_sbml_passos2010_dnadamage_cellularsenescence_biomd0000000287_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This is the model described in: Feedback between p21 and reactive oxygen production is necessary for cell senescence. Passos JF, Nelson G, Wang C, Richter T, Simillion C, Proctor CJ, Miwa S, Olijslage.",
  "schema_version": "2.0"
}

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