About lab
Source-faithful physiology lab for Bindschadler, Sneyd, 2001. Public controls and outputs are mapped to real source symbols for calcium handling.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagebindschadler2001-bifurcation-analysis-two-coupled-calci-336215e0
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_receptor_concentration_in_cell_1",
"label": "Initial Receptor Concentration In Cell 1",
"maps_to": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.initial_receptor_concentration_in_cell_1",
"description": "Initial value for Receptor Concentration In Cell 1. Maps to source symbol `h1`. Units: dimensionless. Naming evidence: source metadata names `h1` as `receptor concentration in cell 1`.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_concentration_c1",
"label": "Initial Concentration C1 (source c1)",
"maps_to": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.initial_concentration_c1",
"description": "Initial value for Concentration C1 (source c1). Maps to source symbol `c1`. Units: micro_molar. Naming evidence: amount concentration units identify a concentration state.",
"accepted_units": [
"micro_molar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.variable_labels"
},
{
"name": "phi1_c1",
"label": "Phi1 C1",
"maps_to": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.phi1_c1",
"description": "Phi1 C1. Maps to source symbol `phi1_c1`. Units: second_order_rate. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "phi1_c2",
"label": "Phi1 C2",
"maps_to": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.phi1_c2",
"description": "Phi1 C2. Maps to source symbol `phi1_c2`. Units: second_order_rate. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "phi2_c1",
"label": "Phi2 C1",
"maps_to": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.phi2_c1",
"description": "Phi2 C1. Maps to source symbol `phi2_c1`. Units: per_second. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "phi2_c2",
"label": "Phi2 C2",
"maps_to": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.phi2_c2",
"description": "Phi2 C2. Maps to source symbol `phi2_c2`. Units: per_second. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "phi3_c1",
"label": "Phi3 C1",
"maps_to": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.phi3_c1",
"description": "Phi3 C1. Maps to source symbol `phi3_c1`. Units: per_second. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "phi3_c2",
"label": "Phi3 C2",
"maps_to": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.phi3_c2",
"description": "Phi3 C2. Maps to source symbol `phi3_c2`. Units: per_second. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Bindschadler2001 - Bifurcation Analysis Two Coupled Calcium Oscillators Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model",
"parameters": {
"model_path": "data/bindschadler_sneyd_2001.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model_state"
],
"from": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.state"
},
{
"to": [
"visualisation.physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model_summary"
],
"from": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model_trajectory"
],
"from": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model_variable_labels"
],
"from": "physiology_cellml_bindschadler_sneyd_2001_bindschadlersneyd2001_model.variable_labels"
}
],
"package": "bindschadler2001-bifurcation-analysis-two-coupled-calci-336215e0",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Bindschadler, Sneyd, 2001. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
}Sign in to start your own run. Public-lab history stays visible here.
Select a run from History to view its results.