About lab
Curated microbiology lab for Takahashi2015 - Zinc regulation E.coli. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.
Runtime
Duration10
Comms Step0.01
Runs
Total0
Completed0
Failed0
Metadata
Packagetakahashi2015-zinc-regulation-e-coli-lab
Created2026-05-15
Updated2026-05-15
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "external_zinc",
"maps_to": "takahashi2015_ecoli_zinc_regulation.external_zinc"
}
],
"outputs": [
{
"name": "state",
"maps_to": "takahashi2015_ecoli_zinc_regulation.state"
},
{
"name": "summary",
"maps_to": "takahashi2015_ecoli_zinc_regulation.summary"
},
{
"name": "species_labels",
"maps_to": "takahashi2015_ecoli_zinc_regulation.species_labels"
},
{
"name": "extracellular_zinc",
"maps_to": "takahashi2015_ecoli_zinc_regulation.extracellular_zinc"
},
{
"name": "intracellular_zinc",
"maps_to": "takahashi2015_ecoli_zinc_regulation.intracellular_zinc"
},
{
"name": "receptor_state",
"maps_to": "takahashi2015_ecoli_zinc_regulation.receptor_state"
}
]
},
"title": "Takahashi2015 - Zinc regulation E.coli Lab",
"models": [
{
"path": "owned/models/takahashi2015_ecoli_zinc_regulation",
"alias": "takahashi2015_ecoli_zinc_regulation",
"provenance": {
"owned_path": "owned/models/takahashi2015_ecoli_zinc_regulation"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.takahashi2015_ecoli_zinc_regulation_state"
],
"from": "takahashi2015_ecoli_zinc_regulation.state"
},
{
"to": [
"visualisation.takahashi2015_ecoli_zinc_regulation_summary"
],
"from": "takahashi2015_ecoli_zinc_regulation.summary"
},
{
"to": [
"visualisation.takahashi2015_ecoli_zinc_regulation_species_labels"
],
"from": "takahashi2015_ecoli_zinc_regulation.species_labels"
},
{
"to": [
"visualisation.takahashi2015_ecoli_zinc_regulation_extracellular_zinc"
],
"from": "takahashi2015_ecoli_zinc_regulation.extracellular_zinc"
},
{
"to": [
"visualisation.takahashi2015_ecoli_zinc_regulation_intracellular_zinc"
],
"from": "takahashi2015_ecoli_zinc_regulation.intracellular_zinc"
},
{
"to": [
"visualisation.takahashi2015_ecoli_zinc_regulation_receptor_state"
],
"from": "takahashi2015_ecoli_zinc_regulation.receptor_state"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Curated microbiology lab for Takahashi2015 - Zinc regulation E.coli. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
"schema_version": "2.0"
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