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Bakshi2020 - Truncated minimal model of alternative pathway of complement system Lab

About lab

Clean Biosimulant lab for immune signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebakshi2020-truncated-minimal-model-of-alternative-pathway-of-com
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicomplementvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_complement_factor_b",
        "label": "Initial complement factor B",
        "maps_to": "signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model.initial_complement_factor_b",
        "description": "Initial level of complement factor B. Maps to SBML symbol `Factor_B`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_complement_factor_d",
        "label": "Initial complement factor D",
        "maps_to": "signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model.initial_complement_factor_d",
        "description": "Initial level of complement factor D. Maps to SBML symbol `Factor_D`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "complement_c3b",
        "label": "complement C3b",
        "maps_to": "signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model.complement_c3b",
        "description": "complement C3b. Maps to SBML symbol `C3b` and is emitted in native SBML units."
      },
      {
        "name": "closed_complement_c3bb_complex",
        "label": "closed complement C3bB complex",
        "maps_to": "signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model.closed_complement_c3bb_complex",
        "description": "closed complement C3bB complex. Maps to SBML symbol `C3bB_closed` and is emitted in native SBML units."
      },
      {
        "name": "open_complement_c3bb_complex",
        "label": "open complement C3bB complex",
        "maps_to": "signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model.open_complement_c3bb_complex",
        "description": "open complement C3bB complex. Maps to SBML symbol `C3bB_open` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "complement"
  ],
  "title": "Bakshi2020 - Truncated minimal model of alternative pathway of complement system Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model",
      "alias": "signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model_state"
      ],
      "from": "signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model_summary"
      ],
      "from": "signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model_species_labels"
      ],
      "from": "signaling_sbml_bakshi2020_truncated_minimal_model_of_alternativ_biomd0000001016_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for immune signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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