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Shorten2000 - Wall Hodgkin Huxley Type Mathematical Bursting Lab

About lab

Source-faithful physiology lab for Shorten, Wall, 2000. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageshorten2000-wall-hodgkin-huxley-type-mathematical-bursting-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_potassium_n_gate",
        "label": "Initial Potassium N Gate",
        "maps_to": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.initial_potassium_n_gate",
        "description": "Initial value for Potassium N Gate. Maps to source symbol `n`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.variable_labels"
      },
      {
        "name": "potassium_n_gate",
        "label": "Potassium N Gate",
        "maps_to": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.potassium_n_gate",
        "description": "Potassium N Gate. Maps to source symbol `n`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_conductance_g_k_dr",
        "label": "Potassium Conductance G K Dr",
        "maps_to": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.potassium_conductance_g_k_dr",
        "description": "Potassium Conductance G K Dr. Maps to source symbol `g_K_DR`. Units: nanoS_per_millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_current_i_k_dr",
        "label": "Potassium Current I K Dr",
        "maps_to": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.potassium_current_i_k_dr",
        "description": "Potassium Current I K Dr. Maps to source symbol `i_K_DR`. Units: picoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_state_h_t",
        "label": "Model State H T (source h_T)",
        "maps_to": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.model_state_h_t",
        "description": "Model State H T (source h_T). Maps to source symbol `h_T`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_m_l",
        "label": "Model State M L (source m_L)",
        "maps_to": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.model_state_m_l",
        "description": "Model State M L (source m_L). Maps to source symbol `m_L`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      }
    ]
  },
  "title": "Shorten2000 - Wall Hodgkin Huxley Type Mathematical Bursting Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_shorten_wall_2000_shortenwall2000_model",
      "alias": "physiology_cellml_shorten_wall_2000_shortenwall2000_model",
      "parameters": {
        "model_path": "data/shorten_wall_2000.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_shorten_wall_2000_shortenwall2000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_shorten_wall_2000_shortenwall2000_model_state"
      ],
      "from": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_shorten_wall_2000_shortenwall2000_model_summary"
      ],
      "from": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_shorten_wall_2000_shortenwall2000_model_trajectory"
      ],
      "from": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_shorten_wall_2000_shortenwall2000_model_variable_labels"
      ],
      "from": "physiology_cellml_shorten_wall_2000_shortenwall2000_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Shorten, Wall, 2000. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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