Smallbone2013 - Glycolysis in S.cerevisiae - Iteration 00 Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_adp",
        "units": "native SBML value",
        "default": 1.29,
        "maps_to": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.initial_adp",
        "description": "Initial condition for adp. Maps to bundled SBML symbol `ADP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_atp",
        "units": "native SBML value",
        "default": 4.29,
        "maps_to": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.initial_atp",
        "description": "Initial condition for atp. Maps to bundled SBML symbol `ATP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_acetaldehyde",
        "units": "native SBML value",
        "default": 0.178140579850657,
        "maps_to": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.initial_acetaldehyde",
        "description": "Initial condition for acetaldehyde. Maps to bundled SBML symbol `AcAld`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_observable_1_3_bisphosphoglycerate",
        "units": "native SBML value",
        "default": 0.000736873499865602,
        "maps_to": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.initial_observable_1_3_bisphosphoglycerate",
        "description": "Initial condition for observable 1 3 bisphosphoglycerate. Maps to bundled SBML symbol `BPG`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_dihydroxyacetone_phosphate",
        "units": "native SBML value",
        "default": 0.290344213186674,
        "maps_to": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.initial_dihydroxyacetone_phosphate",
        "description": "Initial condition for dihydroxyacetone phosphate. Maps to bundled SBML symbol `DHAP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "adp",
        "maps_to": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.adp"
      },
      {
        "name": "atp",
        "maps_to": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.atp"
      },
      {
        "name": "acetaldehyde",
        "maps_to": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.acetaldehyde"
      },
      {
        "name": "observable_1_3_bisphosphoglycerate",
        "maps_to": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.observable_1_3_bisphosphoglycerate"
      },
      {
        "name": "dihydroxyacetone_phosphate",
        "maps_to": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.dihydroxyacetone_phosphate"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.observable_labels"
      }
    ]
  },
  "title": "Smallbone2013 - Glycolysis in S.cerevisiae - Iteration 00 Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model",
      "parameters": {
        "model_path": "data/MODEL1303260000.xml",
        "integration_step": 0.1
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model_observable_values"
      ],
      "from": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model_run_summary"
      ],
      "from": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model_observable_labels"
      ],
      "from": "metabolism_sbml_smallbone2013_glycolysis_in_s_cerevisiae_iterati_model1303260000_model.observable_labels"
    }
  ],
  "package": "smallbone2013-glycolysis-in-s-cerevisiae-iteration-00",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "Smallbone2013 - Glycolysis in S.cerevisiae - Iteration 00 This model is described in the article: A model of yeast glycolysis based on a consistent kinetic characterization of all its enzymes Kieran S. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}