About lab
Source-faithful physiology lab for Activation of the Liver Glycogen Phosphorylase by Ca2+ Oscillations: a Theoretical Study. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiome-35d-activation-liver-glycogen-phosphorylase-by-oscillat
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_pha",
"label": "Initial Pha",
"maps_to": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.initial_pha",
"description": "Initial value for Pha. Maps to source symbol `Pha`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.variable_labels"
},
{
"name": "glucose_concentration",
"label": "Glucose Concentration",
"maps_to": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.glucose_concentration",
"description": "Glucose Concentration. Maps to source symbol `Glc`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "pha",
"label": "Pha",
"maps_to": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.pha",
"description": "Pha. Maps to source symbol `Pha`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha",
"label": "Alpha",
"maps_to": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.alpha",
"description": "Alpha. Maps to source symbol `alpha`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "concentration_a",
"label": "Concentration A (source A)",
"maps_to": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.concentration_a",
"description": "Concentration A (source A). Maps to source symbol `A`. Units: micromolar. Naming evidence: amount concentration units identify a concentration state."
},
{
"name": "model_parameter_k_1",
"label": "Model Parameter K 1 (source K_1)",
"maps_to": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.model_parameter_k_1",
"description": "Model Parameter K 1 (source K_1). Maps to source symbol `K_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
},
{
"name": "model_parameter_k_11",
"label": "Model Parameter K 11 (source K_11)",
"maps_to": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.model_parameter_k_11",
"description": "Model Parameter K 11 (source K_11). Maps to source symbol `K_11`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
}
]
},
"title": "Physiome 35d - Activation Liver Glycogen Phosphorylase By Oscillations Lab",
"models": [
{
"path": "owned/models/physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model",
"alias": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model",
"parameters": {
"model_path": "data/gall_2000.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model_state"
],
"from": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.state"
},
{
"to": [
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],
"from": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model_trajectory"
],
"from": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model_variable_labels"
],
"from": "physiology_cellml_activation_of_the_liver_glycogen_phosphorylase_b_35d_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Activation of the Liver Glycogen Phosphorylase by Ca2+ Oscillations: a Theoretical Study. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.",
"schema_version": "2.0"
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