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Fenton1998 - Vortex Dynamics Three Dimensional Continuous M Fentonkarma199 Lab

About lab

Source-faithful physiology lab for Fenton, Karma, 1998. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagefenton1998-vortex-dynamics-three-dimensional-continuous-m-fenton
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `v`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_membrane_u",
        "label": "Initial Membrane U",
        "maps_to": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.initial_membrane_u",
        "description": "Initial value for Membrane U. Maps to source symbol `u`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `v`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_voltage_vm",
        "label": "Membrane Voltage Vm",
        "maps_to": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.membrane_voltage_vm",
        "description": "Membrane Voltage Vm. Maps to source symbol `Vm`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_u",
        "label": "Membrane U",
        "maps_to": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.membrane_u",
        "description": "Membrane U. Maps to source symbol `u`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "slow_inward_current_w_gate_w",
        "label": "Slow Inward Current W Gate W",
        "maps_to": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.slow_inward_current_w_gate_w",
        "description": "Slow Inward Current W Gate W. Maps to source symbol `w`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_capacitance",
        "label": "Membrane Capacitance",
        "maps_to": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.membrane_capacitance",
        "description": "Membrane Capacitance. Maps to source symbol `Cm`. Units: uF_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_variable_v_0",
        "label": "Model Variable V 0 (source V_0)",
        "maps_to": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.model_variable_v_0",
        "description": "Model Variable V 0 (source V_0). Maps to source symbol `V_0`. Units: mV. Naming evidence: source symbol is too ambiguous for a stronger public label."
      }
    ]
  },
  "title": "Fenton1998 - Vortex Dynamics Three Dimensional Continuous M Fentonkarma199 Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_fenton_karma_1998_fentonkarma1998_model",
      "alias": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model",
      "parameters": {
        "model_path": "data/fenton_karma_1998_BR.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_fenton_karma_1998_fentonkarma1998_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_fenton_karma_1998_fentonkarma1998_model_state"
      ],
      "from": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_fenton_karma_1998_fentonkarma1998_model_summary"
      ],
      "from": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_fenton_karma_1998_fentonkarma1998_model_trajectory"
      ],
      "from": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_fenton_karma_1998_fentonkarma1998_model_variable_labels"
      ],
      "from": "physiology_cellml_fenton_karma_1998_fentonkarma1998_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Fenton, Karma, 1998. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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