BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Lee2008 - ERK and PI3K signal integration by Myc Lab

About lab

Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagelee2008-erk-and-pi3k-signal-integration-by-myc-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkras-erkpi3k-aktvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_myc_transcription_factor_total",
        "label": "Initial MYC transcription factor Total",
        "maps_to": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.initial_myc_transcription_factor_total",
        "description": "Initial level of MYC transcription factor Total. Maps to SBML symbol `Myc_total`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "akt",
        "label": "AKT",
        "maps_to": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.akt",
        "description": "AKT. Maps to SBML symbol `AKT` and is emitted in native SBML units."
      },
      {
        "name": "phosphorylated_akt",
        "label": "phosphorylated AKT",
        "maps_to": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.phosphorylated_akt",
        "description": "phosphorylated AKT. Maps to SBML symbol `AKTp` and is emitted in native SBML units."
      },
      {
        "name": "erk",
        "label": "ERK",
        "maps_to": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.erk",
        "description": "ERK. Maps to SBML symbol `ERK` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "mapk",
    "ras-erk",
    "pi3k-akt"
  ],
  "title": "Lee2008 - ERK and PI3K signal integration by Myc Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model",
      "alias": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model_state"
      ],
      "from": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model_summary"
      ],
      "from": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model_species_labels"
      ],
      "from": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.