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Biomodels model2401110001 - Pancreas Glucose Lab

About lab

Source-faithful physiology lab for pancreas glucose model. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagebiomodels-model2401110001-pancreas-glucose-lab
Created2026-05-23
Updated2026-05-23
physiologysbmlbiomodels_ebifaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_glucose_6_phosphate",
        "label": "Initial Glucose 6 Phosphate",
        "maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.initial_glucose_6_phosphate",
        "description": "Initial value for Glucose 6 Phosphate. Maps to source symbol `g6p`. Units: pmole. Naming evidence: source metadata names `g6p` as `glucose 6-phosphate`.",
        "accepted_units": [
          "pmole"
        ]
      },
      {
        "name": "initial_glucose_blood",
        "label": "Initial Glucose Blood",
        "maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.initial_glucose_blood",
        "description": "Initial value for Glucose Blood. Maps to source symbol `glc_ext`. Units: pmole. Naming evidence: source metadata names `glc_ext` as `glucose (blood)`.",
        "accepted_units": [
          "pmole"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.trajectory"
      },
      {
        "name": "species_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.species_labels"
      },
      {
        "name": "atp",
        "label": "ATP",
        "maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.atp",
        "description": "ATP. Maps to source symbol `atp`. Units: pmole. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "adp",
        "label": "ADP",
        "maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.adp",
        "description": "ADP. Maps to source symbol `adp`. Units: pmole. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "dihydroxyacetone_phosphate",
        "label": "Dihydroxyacetone Phosphate",
        "maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.dihydroxyacetone_phosphate",
        "description": "Dihydroxyacetone Phosphate. Maps to source symbol `dhap`. Units: pmole. Naming evidence: source metadata names `dhap` as `dihydroxyacetone phosphate`."
      },
      {
        "name": "fructose_2_6_bisphosphate",
        "label": "Fructose 2 6 Bisphosphate",
        "maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.fructose_2_6_bisphosphate",
        "description": "Fructose 2 6 Bisphosphate. Maps to source symbol `f26bp`. Units: pmole. Naming evidence: source metadata names `f26bp` as `fructose 2,6-bisphosphate`."
      },
      {
        "name": "var_1_3_biphosphoglycerate",
        "label": "Var 1 3 Biphosphoglycerate",
        "maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.var_1_3_biphosphoglycerate",
        "description": "Var 1 3 Biphosphoglycerate. Maps to source symbol `bpg13`. Units: pmole. Naming evidence: source metadata names `bpg13` as `1,3-biphosphoglycerate`."
      },
      {
        "name": "c_peptide",
        "label": "C Peptide",
        "maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.c_peptide",
        "description": "C Peptide. Maps to source symbol `cpep_ext`. Units: pmole. Naming evidence: source metadata names `cpep_ext` as `C-peptide`."
      }
    ]
  },
  "title": "Biomodels model2401110001 - Pancreas Glucose Lab",
  "models": [
    {
      "path": "owned/models/physiology_sbml_pancreas_glucose_model_model2401110001_model",
      "alias": "physiology_sbml_pancreas_glucose_model_model2401110001_model",
      "parameters": {
        "model_path": "data/MODEL2401110001.xml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_sbml_pancreas_glucose_model_model2401110001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_sbml_pancreas_glucose_model_model2401110001_model_state"
      ],
      "from": "physiology_sbml_pancreas_glucose_model_model2401110001_model.state"
    },
    {
      "to": [
        "visualisation.physiology_sbml_pancreas_glucose_model_model2401110001_model_summary"
      ],
      "from": "physiology_sbml_pancreas_glucose_model_model2401110001_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_sbml_pancreas_glucose_model_model2401110001_model_trajectory"
      ],
      "from": "physiology_sbml_pancreas_glucose_model_model2401110001_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_sbml_pancreas_glucose_model_model2401110001_model_species_labels"
      ],
      "from": "physiology_sbml_pancreas_glucose_model_model2401110001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for pancreas glucose model. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.",
  "schema_version": "2.0"
}

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