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Potter2006 - Mathematical Androgenic Regulation Prostate Intact Lab

About lab

Source-faithful physiology lab for Potter, Zager, Barton, 2006. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagepotter2006-mathematical-androgenic-regulation-prostate-intact-la
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_albumin_testosterone_complex_in_the_prostate",
        "label": "Initial Albumin Testosterone Complex In The Prostate",
        "maps_to": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.initial_albumin_testosterone_complex_in_the_prostate",
        "description": "Initial value for Albumin Testosterone Complex In The Prostate. Maps to source symbol `ATp`. Units: nanomole. Naming evidence: source metadata names `ATp` as `albumin-testosterone complex in the prostate`.",
        "accepted_units": [
          "nanomole"
        ]
      },
      {
        "name": "initial_albumin_5alpha_dihydrotestosterone_complex_in_the_prostate",
        "label": "Initial Albumin 5alpha Dihydrotestosterone Complex In The Prostate",
        "maps_to": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.initial_albumin_5alpha_dihydrotestosterone_complex_in_the_prostate",
        "description": "Initial value for Albumin 5alpha Dihydrotestosterone Complex In The Prostate. Maps to source symbol `ADp`. Units: nanomole. Naming evidence: source metadata names `ADp` as `albumin-5alpha-dihydrotestosterone complex in the prostate`.",
        "accepted_units": [
          "nanomole"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.variable_labels"
      },
      {
        "name": "albumin_testosterone_complex_in_the_prostate",
        "label": "Albumin Testosterone Complex In The Prostate",
        "maps_to": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.albumin_testosterone_complex_in_the_prostate",
        "description": "Albumin Testosterone Complex In The Prostate. Maps to source symbol `ATp`. Units: nanomole. Naming evidence: source metadata names `ATp` as `albumin-testosterone complex in the prostate`."
      },
      {
        "name": "albumin_5alpha_dihydrotestosterone_complex_in_the_prostate",
        "label": "Albumin 5alpha Dihydrotestosterone Complex In The Prostate",
        "maps_to": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.albumin_5alpha_dihydrotestosterone_complex_in_the_prostate",
        "description": "Albumin 5alpha Dihydrotestosterone Complex In The Prostate. Maps to source symbol `ADp`. Units: nanomole. Naming evidence: source metadata names `ADp` as `albumin-5alpha-dihydrotestosterone complex in the prostate`."
      },
      {
        "name": "calcium",
        "label": "Calcium",
        "maps_to": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.calcium",
        "description": "Calcium. Maps to source symbol `CA`. Units: nM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "adb",
        "label": "Adb",
        "maps_to": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.adb",
        "description": "Adb. Maps to source symbol `ADb`. Units: nanomole. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "albumin_5alpha_dihydrotestosterone_complex_in_the_blood",
        "label": "Albumin 5alpha Dihydrotestosterone Complex In The Blood",
        "maps_to": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.albumin_5alpha_dihydrotestosterone_complex_in_the_blood",
        "description": "Albumin 5alpha Dihydrotestosterone Complex In The Blood. Maps to source symbol `ADbl`. Units: nanomole. Naming evidence: source metadata names `ADbl` as `albumin-5alpha-dihydrotestosterone complex in the blood`."
      },
      {
        "name": "albumin_5alpha_dihydrotestosterone_complex_in_the_liver",
        "label": "Albumin 5alpha Dihydrotestosterone Complex In The Liver",
        "maps_to": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.albumin_5alpha_dihydrotestosterone_complex_in_the_liver",
        "description": "Albumin 5alpha Dihydrotestosterone Complex In The Liver. Maps to source symbol `ADl`. Units: nanomole. Naming evidence: source metadata names `ADl` as `albumin-5alpha-dihydrotestosterone complex in the liver`."
      }
    ]
  },
  "title": "Potter2006 - Mathematical Androgenic Regulation Prostate Intact Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model",
      "alias": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model",
      "parameters": {
        "model_path": "data/potter_zager_barton_2006.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model_state"
      ],
      "from": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model_summary"
      ],
      "from": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model_trajectory"
      ],
      "from": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model_variable_labels"
      ],
      "from": "physiology_cellml_potter_zager_barton_2006_potterzagerbarton2006_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Potter, Zager, Barton, 2006. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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