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Bhattacharya2011 Ureacycle Lab

About lab

This model is from the article: Time Scale Simulation of Vmax of Urea Cycle Enzymes. Pradip Bhattacharya, Alok Srivastava, Sarbashish Das, Samiyadeep Nandi, Ganeshan Tamil, Ashutosh Viswabandhu, Heman.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebhattacharya2011-ureacycle-lab
Created2026-05-17
Updated2026-05-17
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_node9",
        "label": "Initial Node9",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.initial_node9",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Node9`."
      },
      {
        "name": "initial_node8",
        "label": "Initial Node8",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.initial_node8",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Node8`."
      },
      {
        "name": "initial_node7",
        "label": "Initial Node7",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.initial_node7",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Node7`."
      },
      {
        "name": "initial_node6",
        "label": "Initial Node6",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.initial_node6",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Node6`."
      },
      {
        "name": "initial_node4",
        "label": "Initial Node4",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.initial_node4",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Node4`."
      },
      {
        "name": "initial_node3",
        "label": "Initial Node3",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.initial_node3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Node3`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.species_labels"
      },
      {
        "name": "node9",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.node9"
      },
      {
        "name": "node8",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.node8"
      },
      {
        "name": "node7",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.node7"
      },
      {
        "name": "node6",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.node6"
      },
      {
        "name": "node4",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.node4"
      },
      {
        "name": "node3",
        "maps_to": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.node3"
      }
    ]
  },
  "tags": [
    "metabolism",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Bhattacharya2011 Ureacycle Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model",
      "alias": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
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      ],
      "from": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model_summary"
      ],
      "from": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model_species_labels"
      ],
      "from": "systemsbiology_sbml_bhattacharya2011_ureacycle_model0318212660_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model is from the article: Time Scale Simulation of Vmax of Urea Cycle Enzymes. Pradip Bhattacharya, Alok Srivastava, Sarbashish Das, Samiyadeep Nandi, Ganeshan Tamil, Ashutosh Viswabandhu, Heman.",
  "schema_version": "2.0"
}

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