About lab
This SBML model reproduced the calcium release from SR by application of 20 mM or 2mM caffeine, described in the paper. * Ca_i_Total and Ca_SR_Total respectively represent the total calcium concentrat.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagerosas2015-caffeine-induced-luminal-sr-calcium-changes-lab
Created2026-05-17
Updated2026-05-17
physiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ca_sr_total",
"label": "Initial Ca Sr Total",
"maps_to": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.initial_ca_sr_total",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mwd805cc43_4a96_472f_a894_c119a6aa895f`."
},
{
"name": "initial_ca_sr",
"label": "Initial Ca Sr",
"maps_to": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.initial_ca_sr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mw447078ee_8bc8_4358_abcd_ade10dba93b0`."
},
{
"name": "initial_ca_i_total",
"label": "Initial Ca I Total",
"maps_to": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.initial_ca_i_total",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mw40a96ef6_32da_46d1_9712_4f53f60bad43`."
},
{
"name": "initial_ca_i",
"label": "Initial Ca I",
"maps_to": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.initial_ca_i",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mwe1a0a651_d2d5_4f75_8d45_9336c60eb9a6`."
},
{
"name": "initial_caff",
"label": "Initial Caff",
"maps_to": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.initial_caff",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mw168e0d8a_b9f7_4d4c_b437_a81206c5d381`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.species_labels"
},
{
"name": "ca_sr_total",
"maps_to": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.ca_sr_total"
},
{
"name": "ca_sr",
"maps_to": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.ca_sr"
},
{
"name": "ca_i_total",
"maps_to": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.ca_i_total"
},
{
"name": "ca_i",
"maps_to": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.ca_i"
},
{
"name": "caff",
"maps_to": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.caff"
}
]
},
"tags": [
"physiology",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Rosas2015 Caffeine Induced Luminal Sr Calcium Changes Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model",
"alias": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model_state"
],
"from": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model_summary"
],
"from": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model_species_labels"
],
"from": "systemsbiology_sbml_rosas2015_caffeine_induced_luminal_sr_calcium_ch_biomd0000000601_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This SBML model reproduced the calcium release from SR by application of 20 mM or 2mM caffeine, described in the paper. * Ca_i_Total and Ca_SR_Total respectively represent the total calcium concentrat.",
"schema_version": "2.0"
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