About lab
Single-model lab wrapper for Cuadros2020 - SIHRD spatiotemporal model of COVID-19 transmission in Ohio. The role of geospatial disparities in the dynamics of the COVID-19 pandemic is poorly understood. We developed a spatially-explicit mathematical model to simulate transmission dynamics of COVID-19 dis.
Runtime
Duration10
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagecuadros2020-sihrd-spatiotemporal-model-of-covid-19-transmission
Created2026-05-15
Updated2026-05-15
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "airport_county_transmission_rate",
"label": "Airport County Transmission Rate",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.airport_county_transmission_rate"
},
{
"name": "highway_county_transmission_rate",
"label": "Highway County Transmission Rate",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.highway_county_transmission_rate"
},
{
"name": "low_risk_county_transmission_rate",
"label": "Low Risk County Transmission Rate",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.low_risk_county_transmission_rate"
},
{
"name": "recovery_rate",
"label": "Recovery Rate",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.recovery_rate"
},
{
"name": "hospital_to_icu_rate",
"label": "Hospital To Icu Rate",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.hospital_to_icu_rate"
}
],
"outputs": [
{
"name": "state",
"label": "Model state",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.summary"
},
{
"name": "species_labels",
"label": "Species labels",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.species_labels"
},
{
"name": "infected_low_risk_counties",
"label": "Infected Low risk counties",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.infected_low_risk_counties"
},
{
"name": "infected_counties_with_airports",
"label": "Infected Counties with airports",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.infected_counties_with_airports"
},
{
"name": "infected_counties_with_highways",
"label": "Infected Counties with highways",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.infected_counties_with_highways"
},
{
"name": "hospitalised_low_risk_counties",
"label": "Hospitalised Low risk counties",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.hospitalised_low_risk_counties"
},
{
"name": "hospitalised_counties_with_airports",
"label": "Hospitalised Counties with airports",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.hospitalised_counties_with_airports"
},
{
"name": "hospitalised_counties_with_highways",
"label": "Hospitalised Counties with highways",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.hospitalised_counties_with_highways"
},
{
"name": "icu_low_risk_counties",
"label": "ICU Low risk counties",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.icu_low_risk_counties"
},
{
"name": "icu_counties_with_airports",
"label": "ICU Counties with airports",
"maps_to": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.icu_counties_with_airports"
}
]
},
"title": "Cuadros2020 - SIHRD spatiotemporal model of COVID-19 transmission in Ohio Lab",
"models": [
{
"path": "owned/models/epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model",
"alias": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model",
"parameters": {
"model_path": "data/BIOMD0000000969.xml",
"integration_step": 0.1
},
"provenance": {
"owned_path": "owned/models/epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model_state"
],
"from": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.state"
},
{
"to": [
"visualisation.epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model_summary"
],
"from": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.summary"
},
{
"to": [
"visualisation.epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model_species_labels"
],
"from": "epidemiology_sbml_cuadros2020_sihrd_spatiotemporal_model_of_covid_biomd0000000969_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Single-model lab wrapper for Cuadros2020 - SIHRD spatiotemporal model of COVID-19 transmission in Ohio. The role of geospatial disparities in the dynamics of the COVID-19 pandemic is poorly understood. We developed a spatially-explicit mathematical model to simulate transmission dynamics of COVID-19 dis.",
"schema_version": "2.0"
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