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Koster1988 Histone Expression Lab

About lab

Xenopus histone expression kinetics. This model is described in the article: Kinetics of histone gene expression during early development of Xenopus laevis. It can be used to explore generegulation koster1988 histone expression model5954483266 dynamics and compare simulation behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagekoster1988-histone-expression-lab
Created2026-05-15
Updated2026-05-15
generegulationsbmlbiomodels_ebifaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [],
    "outputs": [
      {
        "name": "histone_rna",
        "maps_to": "koster1988_histone_expression.histone_rna"
      },
      {
        "name": "histone_protein",
        "maps_to": "koster1988_histone_expression.histone_protein"
      },
      {
        "name": "state",
        "maps_to": "koster1988_histone_expression.state"
      },
      {
        "name": "summary",
        "maps_to": "koster1988_histone_expression.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "koster1988_histone_expression.species_labels"
      }
    ]
  },
  "title": "Koster1988 Histone Expression Lab",
  "models": [
    {
      "path": "owned/models/koster1988_histone_expression",
      "alias": "koster1988_histone_expression",
      "parameters": {
        "model_path": "data/MODEL5954483266.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/koster1988_histone_expression"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.koster1988_histone_expression_histone_rna"
      ],
      "from": "koster1988_histone_expression.histone_rna"
    },
    {
      "to": [
        "visualisation.koster1988_histone_expression_histone_protein"
      ],
      "from": "koster1988_histone_expression.histone_protein"
    },
    {
      "to": [
        "visualisation.koster1988_histone_expression_state"
      ],
      "from": "koster1988_histone_expression.state"
    },
    {
      "to": [
        "visualisation.koster1988_histone_expression_summary"
      ],
      "from": "koster1988_histone_expression.summary"
    },
    {
      "to": [
        "visualisation.koster1988_histone_expression_species_labels"
      ],
      "from": "koster1988_histone_expression.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Xenopus histone expression kinetics. This model is described in the article: Kinetics of histone gene expression during early development of Xenopus laevis. It can be used to explore generegulation koster1988 histone expression model5954483266 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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