About lab
Schmitz2014 - RNA triplex formation The model is parameterized using theparameters for gene CCDC3 from Supplementary Table S1. It can be used to explore systemsbiology schmitz2014 rna triplex formation BioModels0000000530 dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageschmitz2014-rna-triplex-formation
Created2026-05-17
Updated2026-06-13
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_protein",
"label": "Initial Protein",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.initial_protein",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_10`."
},
{
"name": "initial_mrna",
"label": "Initial MRNA",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.initial_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_1`."
},
{
"name": "initial_tf_mi_rna_2",
"label": "Initial Tf Mi RNA 2",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.initial_tf_mi_rna_2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_9`."
},
{
"name": "initial_tf_mi_rna_1",
"label": "Initial Tf Mi RNA 1",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.initial_tf_mi_rna_1",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_8`."
},
{
"name": "initial_tf_mrna",
"label": "Initial Tf MRNA",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.initial_tf_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_7`."
},
{
"name": "initial_triplex",
"label": "Initial Triplex",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.initial_triplex",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_6`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.species_labels"
},
{
"name": "protein",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.protein"
},
{
"name": "mrna",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.mrna"
},
{
"name": "tf_mi_rna_2",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.tf_mi_rna_2"
},
{
"name": "tf_mi_rna_1",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.tf_mi_rna_1"
},
{
"name": "tf_mrna",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.tf_mrna"
},
{
"name": "triplex",
"maps_to": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.triplex"
}
]
},
"tags": [
"generegulation",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Schmitz2014 Rna Triplex Formation Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model_state"
],
"from": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model_summary"
],
"from": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model_species_labels"
],
"from": "systemsbiology_sbml_schmitz2014_rna_triplex_formation_biomd0000000530_model.species_labels"
}
],
"package": "schmitz2014-rna-triplex-formation",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Schmitz2014 - RNA triplex formation The model is parameterized using theparameters for gene CCDC3 from Supplementary Table S1. It can be used to explore systemsbiology schmitz2014 rna triplex formation BioModels0000000530 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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