Karapetyan2016 Genetic Oscillatory Network Activator Titration Circuit Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_r_i",
        "label": "Initial Model State R I",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.initial_model_state_r_i",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `rI`."
      },
      {
        "name": "initial_model_state_r_a",
        "label": "Initial Model State R A",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.initial_model_state_r_a",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `rA`."
      },
      {
        "name": "initial_model_state_g0",
        "label": "Initial Model State G0",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.initial_model_state_g0",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `G0`."
      },
      {
        "name": "initial_model_state_g3",
        "label": "Initial Model State G3",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.initial_model_state_g3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `G3`."
      },
      {
        "name": "initial_model_state_g2",
        "label": "Initial Model State G2",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.initial_model_state_g2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `G2`."
      },
      {
        "name": "initial_model_state_g1",
        "label": "Initial Model State G1",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.initial_model_state_g1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `G1`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.species_labels"
      },
      {
        "name": "r_i",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.r_i"
      },
      {
        "name": "r_a",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.r_a"
      },
      {
        "name": "model_state_g0",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.model_state_g0"
      },
      {
        "name": "model_state_g3",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.model_state_g3"
      },
      {
        "name": "model_state_g2",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.model_state_g2"
      },
      {
        "name": "model_state_g1",
        "maps_to": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.model_state_g1"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Karapetyan2016 Genetic Oscillatory Network Activator Titration Circuit Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model",
      "alias": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model_state"
      ],
      "from": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model_summary"
      ],
      "from": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model_species_labels"
      ],
      "from": "systemsbiology_sbml_karapetyan2016_genetic_oscillatory_network_activ_biomd0000000586_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Karapetyan2016 - Genetic oscillatory network - Activator Titration Circuit (ATC) This model is described in the article: Role of DNA binding sites and slow unbinding kinetics in titration-based oscill. It can be used to explore systemsbiology karapetyan2016 genetic oscillatory network activ dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}