About lab
Reed2004 - Methionine Cycle This model is described in the article: A mathematical model of the methionine cycle. Reed MC, Nijhout HF, Sparks R, Ulrich CM.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagereed2004-methionine-cycle-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cystathionine",
"label": "Initial Cystathionine",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.initial_cystathionine",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Cystathionine`."
},
{
"name": "initial_metin",
"label": "Initial Metin",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.initial_metin",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Metin`."
},
{
"name": "initial_ado_met",
"label": "Initial Ado Met",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.initial_ado_met",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AdoMet`."
},
{
"name": "initial_methionine",
"label": "Initial Methionine",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.initial_methionine",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Methionine`."
},
{
"name": "initial_ado_hcy",
"label": "Initial Ado Hcy",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.initial_ado_hcy",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AdoHcy`."
},
{
"name": "initial_model_state_5m_thf",
"label": "Initial Model State 5M Thf",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.initial_model_state_5m_thf",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `_5mTHF`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.species_labels"
},
{
"name": "cystathionine",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.cystathionine"
},
{
"name": "metin",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.metin"
},
{
"name": "ado_met",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.ado_met"
},
{
"name": "methionine",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.methionine"
},
{
"name": "ado_hcy",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.ado_hcy"
},
{
"name": "model_state_5m_thf",
"maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.model_state_5m_thf"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Reed2004 Methionine Cycle Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model",
"alias": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model_state"
],
"from": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model_summary"
],
"from": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model_species_labels"
],
"from": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Reed2004 - Methionine Cycle This model is described in the article: A mathematical model of the methionine cycle. Reed MC, Nijhout HF, Sparks R, Ulrich CM.",
"schema_version": "2.0"
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