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Reed2004 Methionine Cycle Lab

About lab

Reed2004 - Methionine Cycle This model is described in the article: A mathematical model of the methionine cycle. Reed MC, Nijhout HF, Sparks R, Ulrich CM.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagereed2004-methionine-cycle-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cystathionine",
        "label": "Initial Cystathionine",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.initial_cystathionine",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Cystathionine`."
      },
      {
        "name": "initial_metin",
        "label": "Initial Metin",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.initial_metin",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Metin`."
      },
      {
        "name": "initial_ado_met",
        "label": "Initial Ado Met",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.initial_ado_met",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AdoMet`."
      },
      {
        "name": "initial_methionine",
        "label": "Initial Methionine",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.initial_methionine",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Methionine`."
      },
      {
        "name": "initial_ado_hcy",
        "label": "Initial Ado Hcy",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.initial_ado_hcy",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AdoHcy`."
      },
      {
        "name": "initial_model_state_5m_thf",
        "label": "Initial Model State 5M Thf",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.initial_model_state_5m_thf",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `_5mTHF`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.species_labels"
      },
      {
        "name": "cystathionine",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.cystathionine"
      },
      {
        "name": "metin",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.metin"
      },
      {
        "name": "ado_met",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.ado_met"
      },
      {
        "name": "methionine",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.methionine"
      },
      {
        "name": "ado_hcy",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.ado_hcy"
      },
      {
        "name": "model_state_5m_thf",
        "maps_to": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.model_state_5m_thf"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Reed2004 Methionine Cycle Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model",
      "alias": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model_state"
      ],
      "from": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model_summary"
      ],
      "from": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model_species_labels"
      ],
      "from": "systemsbiology_sbml_reed2004_methionine_cycle_biomd0000000698_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Reed2004 - Methionine Cycle This model is described in the article: A mathematical model of the methionine cycle. Reed MC, Nijhout HF, Sparks R, Ulrich CM.",
  "schema_version": "2.0"
}

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