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Besozzi2012 - Oscillatory regimes in the Ras/cAMP/PKA pathway in S.cerevisiae Lab

About lab

Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebesozzi2012-oscillatory-regimes-in-the-ras-camp-pka-pathway-in-s
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebiras-erkcamp-pkavisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_atp",
        "label": "Initial ATP",
        "maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.initial_atp",
        "description": "Initial level of ATP. Maps to SBML symbol `ATP`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_gdp",
        "label": "Initial GDP",
        "maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.initial_gdp",
        "description": "Initial level of GDP. Maps to SBML symbol `GDP`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_gtp",
        "label": "Initial GTP",
        "maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.initial_gtp",
        "description": "Initial level of GTP. Maps to SBML symbol `GTP`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "ras2_gdp",
        "label": "RAS2 GDP",
        "maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.ras2_gdp",
        "description": "RAS2 GDP. Maps to SBML symbol `Ras2_GDP` and is emitted in native SBML units."
      },
      {
        "name": "ras2_gdp_cdc25",
        "label": "RAS2 GDP CDC25",
        "maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.ras2_gdp_cdc25",
        "description": "RAS2 GDP CDC25. Maps to SBML symbol `Ras2_GDP_Cdc25` and is emitted in native SBML units."
      },
      {
        "name": "ras2_cdc25",
        "label": "RAS2 CDC25",
        "maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.ras2_cdc25",
        "description": "RAS2 CDC25. Maps to SBML symbol `Ras2_Cdc25` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "ras-erk",
    "camp-pka"
  ],
  "title": "Besozzi2012 - Oscillatory regimes in the Ras/cAMP/PKA pathway in S.cerevisiae Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model",
      "alias": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model_state"
      ],
      "from": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model_summary"
      ],
      "from": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model_species_labels"
      ],
      "from": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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