About lab
Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
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Metadata
Packagebesozzi2012-oscillatory-regimes-in-the-ras-camp-pka-pathway-in-s
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebiras-erkcamp-pkavisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_atp",
"label": "Initial ATP",
"maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.initial_atp",
"description": "Initial level of ATP. Maps to SBML symbol `ATP`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_gdp",
"label": "Initial GDP",
"maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.initial_gdp",
"description": "Initial level of GDP. Maps to SBML symbol `GDP`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_gtp",
"label": "Initial GTP",
"maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.initial_gtp",
"description": "Initial level of GTP. Maps to SBML symbol `GTP`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "ras2_gdp",
"label": "RAS2 GDP",
"maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.ras2_gdp",
"description": "RAS2 GDP. Maps to SBML symbol `Ras2_GDP` and is emitted in native SBML units."
},
{
"name": "ras2_gdp_cdc25",
"label": "RAS2 GDP CDC25",
"maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.ras2_gdp_cdc25",
"description": "RAS2 GDP CDC25. Maps to SBML symbol `Ras2_GDP_Cdc25` and is emitted in native SBML units."
},
{
"name": "ras2_cdc25",
"label": "RAS2 CDC25",
"maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.ras2_cdc25",
"description": "RAS2 CDC25. Maps to SBML symbol `Ras2_Cdc25` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"ras-erk",
"camp-pka"
],
"title": "Besozzi2012 - Oscillatory regimes in the Ras/cAMP/PKA pathway in S.cerevisiae Lab",
"models": [
{
"path": "owned/models/signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model",
"alias": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model_state"
],
"from": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.state"
},
{
"to": [
"visualisation.signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model_summary"
],
"from": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model_species_labels"
],
"from": "signaling_sbml_besozzi2012_oscillatory_regimes_in_the_ras_camp_biomd0000000478_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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