About lab
Curated microbiology lab for Kuwahara2010_Fimbriation_Switch_28C. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.
Runtime
Duration2
Comms Step0.01
Runs
Total0
Completed0
Failed0
Metadata
Packagekuwahara2010-fimbriation-switch-28c-lab
Created2026-05-15
Updated2026-05-15
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_fime_site_recombinase",
"maps_to": "kuwahara2010_fimbriation_switch_28c.initial_fime_site_recombinase"
},
{
"name": "initial_fimb_site_recombinase",
"maps_to": "kuwahara2010_fimbriation_switch_28c.initial_fimb_site_recombinase"
}
],
"outputs": [
{
"name": "state",
"maps_to": "kuwahara2010_fimbriation_switch_28c.state"
},
{
"name": "summary",
"maps_to": "kuwahara2010_fimbriation_switch_28c.summary"
},
{
"name": "species_labels",
"maps_to": "kuwahara2010_fimbriation_switch_28c.species_labels"
},
{
"name": "fime_site_recombinase",
"maps_to": "kuwahara2010_fimbriation_switch_28c.fime_site_recombinase"
},
{
"name": "fimb_site_recombinase",
"maps_to": "kuwahara2010_fimbriation_switch_28c.fimb_site_recombinase"
},
{
"name": "leucine_responsive_regulatory_protein",
"maps_to": "kuwahara2010_fimbriation_switch_28c.leucine_responsive_regulatory_protein"
},
{
"name": "integration_host_factor",
"maps_to": "kuwahara2010_fimbriation_switch_28c.integration_host_factor"
}
]
},
"title": "Kuwahara2010_Fimbriation_Switch_28C Lab",
"models": [
{
"path": "owned/models/kuwahara2010_fimbriation_switch_28c",
"alias": "kuwahara2010_fimbriation_switch_28c",
"provenance": {
"owned_path": "owned/models/kuwahara2010_fimbriation_switch_28c"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.kuwahara2010_fimbriation_switch_28c_state"
],
"from": "kuwahara2010_fimbriation_switch_28c.state"
},
{
"to": [
"visualisation.kuwahara2010_fimbriation_switch_28c_summary"
],
"from": "kuwahara2010_fimbriation_switch_28c.summary"
},
{
"to": [
"visualisation.kuwahara2010_fimbriation_switch_28c_species_labels"
],
"from": "kuwahara2010_fimbriation_switch_28c.species_labels"
},
{
"to": [
"visualisation.kuwahara2010_fimbriation_switch_28c_fime_site_recombinase"
],
"from": "kuwahara2010_fimbriation_switch_28c.fime_site_recombinase"
},
{
"to": [
"visualisation.kuwahara2010_fimbriation_switch_28c_fimb_site_recombinase"
],
"from": "kuwahara2010_fimbriation_switch_28c.fimb_site_recombinase"
},
{
"to": [
"visualisation.kuwahara2010_fimbriation_switch_28c_leucine_responsive_regulatory_protein"
],
"from": "kuwahara2010_fimbriation_switch_28c.leucine_responsive_regulatory_protein"
},
{
"to": [
"visualisation.kuwahara2010_fimbriation_switch_28c_integration_host_factor"
],
"from": "kuwahara2010_fimbriation_switch_28c.integration_host_factor"
}
],
"runtime": {
"duration": 2,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Curated microbiology lab for Kuwahara2010_Fimbriation_Switch_28C. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
"schema_version": "2.0"
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