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Katsnelson2004 - Katsnelson Nikitina Chemla Solovyova Coirault Le Lab

About lab

Source-faithful physiology lab for Katsnelson, Nikitina, Chemla, Solovyova, Coirault, Lecarpentier, Markhasin, 2004. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagekatsnelson2004-katsnelson-nikitina-chemla-solovyova-coirault-le
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_ca_c",
        "label": "Initial Ca C",
        "maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.initial_ca_c",
        "description": "Initial value for Ca C. Maps to source symbol `Ca_C`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_calcium_handling_a",
        "label": "Initial Calcium Handling A",
        "maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.initial_calcium_handling_a",
        "description": "Initial value for Calcium Handling A. Maps to source symbol `A`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.variable_labels"
      },
      {
        "name": "alpha_1",
        "label": "Alpha 1",
        "maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.alpha_1",
        "description": "Alpha 1. Maps to source symbol `alpha_1`. Units: per_um. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_2",
        "label": "Alpha 2",
        "maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.alpha_2",
        "description": "Alpha 2. Maps to source symbol `alpha_2`. Units: per_um. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_3",
        "label": "Alpha 3",
        "maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.alpha_3",
        "description": "Alpha 3. Maps to source symbol `alpha_3`. Units: per_um. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_g",
        "label": "Alpha G",
        "maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.alpha_g",
        "description": "Alpha G. Maps to source symbol `alpha_G`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_p",
        "label": "Alpha P",
        "maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.alpha_p",
        "description": "Alpha P. Maps to source symbol `alpha_P`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_p_lengthening",
        "label": "Alpha P Lengthening",
        "maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.alpha_p_lengthening",
        "description": "Alpha P Lengthening. Maps to source symbol `alpha_P_lengthening`. Units: per_um. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Katsnelson2004 - Katsnelson Nikitina Chemla Solovyova Coirault Le Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model",
      "alias": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model",
      "parameters": {
        "model_path": "data/katsnelson_2004a.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model_state"
      ],
      "from": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model_summary"
      ],
      "from": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model_trajectory"
      ],
      "from": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model_variable_labels"
      ],
      "from": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Katsnelson, Nikitina, Chemla, Solovyova, Coirault, Lecarpentier, Markhasin, 2004. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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