About lab
This model 2 described in the supplement of the article below. It is parameterized for the WT at 24°C.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageakman2008-circadian-clock-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_wc_1_mrna",
"label": "Initial Wc 1 MRNA",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.initial_wc_1_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MW`."
},
{
"name": "initial_frq_mrna",
"label": "Initial Frq MRNA",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.initial_frq_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MF`."
},
{
"name": "initial_wc_1",
"label": "Initial Wc 1",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.initial_wc_1",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PW`."
},
{
"name": "initial_wc_1_1",
"label": "Initial Wc 1 1",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.initial_wc_1_1",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `E1W`."
},
{
"name": "initial_wc_1_2",
"label": "Initial Wc 1 2",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.initial_wc_1_2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `E2W`."
},
{
"name": "initial_l_frq_1",
"label": "Initial L Frq 1",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.initial_l_frq_1",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `E1Fp`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.species_labels"
},
{
"name": "wc_1_mrna",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.wc_1_mrna"
},
{
"name": "frq_mrna",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.frq_mrna"
},
{
"name": "wc_1",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.wc_1"
},
{
"name": "wc_1_1",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.wc_1_1"
},
{
"name": "wc_1_2",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.wc_1_2"
},
{
"name": "l_frq_1",
"maps_to": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.l_frq_1"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Akman2008 Circadian Clock Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model",
"alias": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model_state"
],
"from": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model_summary"
],
"from": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model_species_labels"
],
"from": "systemsbiology_sbml_akman2008_circadian_clock_model2_biomd0000000214_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This model 2 described in the supplement of the article below. It is parameterized for the WT at 24°C.",
"schema_version": "2.0"
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