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Borghans1997 - Complex Intracellular Calcium Oscillations Theoretical Lab

About lab

Source-faithful physiology lab for Borghans 1997. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageborghans1997-complex-intracellular-calcium-oscillations-theoreti
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_ca_y",
        "label": "Initial Ca Y",
        "maps_to": "physiology_cellml_borghans_1997_borghans1997_model.initial_ca_y",
        "description": "Initial value for Ca Y. Maps to source symbol `Y`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "uM"
        ]
      },
      {
        "name": "initial_ca_z",
        "label": "Initial Ca Z",
        "maps_to": "physiology_cellml_borghans_1997_borghans1997_model.initial_ca_z",
        "description": "Initial value for Ca Z. Maps to source symbol `Z`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "uM"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_borghans_1997_borghans1997_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_borghans_1997_borghans1997_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_borghans_1997_borghans1997_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_borghans_1997_borghans1997_model.variable_labels"
      },
      {
        "name": "ca_y",
        "label": "Ca Y",
        "maps_to": "physiology_cellml_borghans_1997_borghans1997_model.ca_y",
        "description": "Ca Y. Maps to source symbol `Y`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_z",
        "label": "Ca Z",
        "maps_to": "physiology_cellml_borghans_1997_borghans1997_model.ca_z",
        "description": "Ca Z. Maps to source symbol `Z`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "rho",
        "label": "Rho",
        "maps_to": "physiology_cellml_borghans_1997_borghans1997_model.rho",
        "description": "Rho. Maps to source symbol `rho`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "beta",
        "label": "Beta",
        "maps_to": "physiology_cellml_borghans_1997_borghans1997_model.beta",
        "description": "Beta. Maps to source symbol `beta`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_k",
        "label": "Ca K",
        "maps_to": "physiology_cellml_borghans_1997_borghans1997_model.ca_k",
        "description": "Ca K. Maps to source symbol `K`. Units: per_min. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "gamma",
        "label": "Gamma",
        "maps_to": "physiology_cellml_borghans_1997_borghans1997_model.gamma",
        "description": "Gamma. Maps to source symbol `gamma`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Borghans1997 - Complex Intracellular Calcium Oscillations Theoretical Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_borghans_1997_borghans1997_model",
      "alias": "physiology_cellml_borghans_1997_borghans1997_model",
      "parameters": {
        "model_path": "data/borghans_dupont_goldbeter_1997a.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_borghans_1997_borghans1997_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_borghans_1997_borghans1997_model_state"
      ],
      "from": "physiology_cellml_borghans_1997_borghans1997_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_borghans_1997_borghans1997_model_summary"
      ],
      "from": "physiology_cellml_borghans_1997_borghans1997_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_borghans_1997_borghans1997_model_trajectory"
      ],
      "from": "physiology_cellml_borghans_1997_borghans1997_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_borghans_1997_borghans1997_model_variable_labels"
      ],
      "from": "physiology_cellml_borghans_1997_borghans1997_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Borghans 1997. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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