About lab
Source-faithful physiology lab for Borghans 1997. Public controls and outputs are mapped to real source symbols for calcium handling.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageborghans1997-complex-intracellular-calcium-oscillations-theoreti
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ca_y",
"label": "Initial Ca Y",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.initial_ca_y",
"description": "Initial value for Ca Y. Maps to source symbol `Y`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"uM"
]
},
{
"name": "initial_ca_z",
"label": "Initial Ca Z",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.initial_ca_z",
"description": "Initial value for Ca Z. Maps to source symbol `Z`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"uM"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.variable_labels"
},
{
"name": "ca_y",
"label": "Ca Y",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.ca_y",
"description": "Ca Y. Maps to source symbol `Y`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_z",
"label": "Ca Z",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.ca_z",
"description": "Ca Z. Maps to source symbol `Z`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "rho",
"label": "Rho",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.rho",
"description": "Rho. Maps to source symbol `rho`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "beta",
"label": "Beta",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.beta",
"description": "Beta. Maps to source symbol `beta`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_k",
"label": "Ca K",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.ca_k",
"description": "Ca K. Maps to source symbol `K`. Units: per_min. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "gamma",
"label": "Gamma",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.gamma",
"description": "Gamma. Maps to source symbol `gamma`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Borghans1997 - Complex Intracellular Calcium Oscillations Theoretical Lab",
"models": [
{
"path": "owned/models/physiology_cellml_borghans_1997_borghans1997_model",
"alias": "physiology_cellml_borghans_1997_borghans1997_model",
"parameters": {
"model_path": "data/borghans_dupont_goldbeter_1997a.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_borghans_1997_borghans1997_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_borghans_1997_borghans1997_model_state"
],
"from": "physiology_cellml_borghans_1997_borghans1997_model.state"
},
{
"to": [
"visualisation.physiology_cellml_borghans_1997_borghans1997_model_summary"
],
"from": "physiology_cellml_borghans_1997_borghans1997_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_borghans_1997_borghans1997_model_trajectory"
],
"from": "physiology_cellml_borghans_1997_borghans1997_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_borghans_1997_borghans1997_model_variable_labels"
],
"from": "physiology_cellml_borghans_1997_borghans1997_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Borghans 1997. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
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