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Riccobene1999 - Omann Linderman Activation Desensitisation G Protein Lab

About lab

Source-faithful physiology lab for Riccobene, Omann, Linderman, 1999. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagericcobene1999-omann-linderman-activation-desensitisation-g-prote
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_concentration_g",
        "label": "Initial Concentration G (source G)",
        "maps_to": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.initial_concentration_g",
        "description": "Initial value for Concentration G (source G). Maps to source symbol `G`. Units: molar. Naming evidence: amount concentration units identify a concentration state.",
        "accepted_units": [
          "molar"
        ]
      },
      {
        "name": "initial_concentration_lr",
        "label": "Initial Concentration Lr (source LR)",
        "maps_to": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.initial_concentration_lr",
        "description": "Initial value for Concentration Lr (source LR). Maps to source symbol `LR`. Units: molar. Naming evidence: amount concentration units identify a concentration state.",
        "accepted_units": [
          "molar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.variable_labels"
      },
      {
        "name": "intracellular_potassium",
        "label": "Intracellular Potassium",
        "maps_to": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.intracellular_potassium",
        "description": "Intracellular Potassium. Maps to source symbol `ki`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "concentration_g",
        "label": "Concentration G (source G)",
        "maps_to": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.concentration_g",
        "description": "Concentration G (source G). Maps to source symbol `G`. Units: molar. Naming evidence: amount concentration units identify a concentration state."
      },
      {
        "name": "concentration_lr",
        "label": "Concentration Lr (source LR)",
        "maps_to": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.concentration_lr",
        "description": "Concentration Lr (source LR). Maps to source symbol `LR`. Units: molar. Naming evidence: amount concentration units identify a concentration state."
      },
      {
        "name": "concentration_r",
        "label": "Concentration R (source R)",
        "maps_to": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.concentration_r",
        "description": "Concentration R (source R). Maps to source symbol `R`. Units: molar. Naming evidence: amount concentration units identify a concentration state."
      },
      {
        "name": "concentration_r_ds",
        "label": "Concentration R Ds (source R_ds)",
        "maps_to": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.concentration_r_ds",
        "description": "Concentration R Ds (source R_ds). Maps to source symbol `R_ds`. Units: molar. Naming evidence: amount concentration units identify a concentration state."
      },
      {
        "name": "lr_ds",
        "label": "Lr Ds",
        "maps_to": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.lr_ds",
        "description": "Lr Ds. Maps to source symbol `LR_ds`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Riccobene1999 - Omann Linderman Activation Desensitisation G Protein Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model",
      "alias": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model",
      "parameters": {
        "model_path": "data/riccobene_omann_linderman_1999.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model_state"
      ],
      "from": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model_summary"
      ],
      "from": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model_trajectory"
      ],
      "from": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model_variable_labels"
      ],
      "from": "physiology_cellml_riccobene_omann_linderman_1999_riccobeneomannlinderman1999_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Riccobene, Omann, Linderman, 1999. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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