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Kolodkin2013 - Nuclear receptor-mediated cortisol signalling network Lab

About lab

Clean Biosimulant lab for systems signaling model: Kolodkin2013 - Nuclear receptor-mediated cortisol signalling network. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagekolodkin2013-nuclear-receptor-mediated-cortisol-signalling-netwo
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebigpcrstress-responsevisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cort_degr",
        "label": "Initial Cort Degr",
        "maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.initial_cort_degr",
        "description": "Initial level of Cort Degr. Maps to SBML symbol `s10`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_cort_added",
        "label": "Initial Cort Added",
        "maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.initial_cort_added",
        "description": "Initial level of Cort Added. Maps to SBML symbol `CortAdded`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_cortisone",
        "label": "Initial Cortisone",
        "maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.initial_cortisone",
        "description": "Initial level of Cortisone. Maps to SBML symbol `Cortisone`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "source_defined_s_rna_state",
        "label": "source-defined S_RNA state",
        "maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.source_defined_s_rna_state",
        "description": "source-defined S_RNA state. Maps to SBML symbol `s28` and is emitted in native SBML units."
      },
      {
        "name": "s_prot",
        "label": "S PROT",
        "maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.s_prot",
        "description": "S PROT. Maps to SBML symbol `s36` and is emitted in native SBML units."
      },
      {
        "name": "pxr_gene",
        "label": "PXR GENE",
        "maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.pxr_gene",
        "description": "PXR GENE. Maps to SBML symbol `s46` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "gpcr",
    "stress-response"
  ],
  "title": "Kolodkin2013 - Nuclear receptor-mediated cortisol signalling network Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model",
      "alias": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model_state"
      ],
      "from": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model_summary"
      ],
      "from": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model_species_labels"
      ],
      "from": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Kolodkin2013 - Nuclear receptor-mediated cortisol signalling network. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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