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Rantasalo2016 Constitutive Stf Vp16 Lab

About lab

constitutive synthetic expression modulator. Rantasalo2015-Synthetic_expresion_modulator_constitutiveSTF_VP16This model is part of a family of models describing a modular synthetic expression system that modulates the expression level of a gene. It can be used to explore generegulation rantasalo2016 synthetic expresion modulator cons dynamics and compare simulation behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagerantasalo2016-constitutive-stf-vp16-lab
Created2026-05-15
Updated2026-05-15
generegulationsbmlbiomodels_ebifaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [],
    "outputs": [
      {
        "name": "mcherry_messenger_rna",
        "maps_to": "rantasalo2016_constitutive_stf_vp16.mcherry_messenger_rna"
      },
      {
        "name": "mcherry_reporter",
        "maps_to": "rantasalo2016_constitutive_stf_vp16.mcherry_reporter"
      },
      {
        "name": "cytosolic_transcription_factor",
        "maps_to": "rantasalo2016_constitutive_stf_vp16.cytosolic_transcription_factor"
      },
      {
        "name": "nuclear_transcription_factor",
        "maps_to": "rantasalo2016_constitutive_stf_vp16.nuclear_transcription_factor"
      },
      {
        "name": "state",
        "maps_to": "rantasalo2016_constitutive_stf_vp16.state"
      },
      {
        "name": "summary",
        "maps_to": "rantasalo2016_constitutive_stf_vp16.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "rantasalo2016_constitutive_stf_vp16.species_labels"
      }
    ]
  },
  "title": "Rantasalo2016 Constitutive Stf Vp16 Lab",
  "models": [
    {
      "path": "owned/models/rantasalo2016_constitutive_stf_vp16",
      "alias": "rantasalo2016_constitutive_stf_vp16",
      "parameters": {
        "model_path": "data/MODEL1510230001.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/rantasalo2016_constitutive_stf_vp16"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.rantasalo2016_constitutive_stf_vp16_mcherry_messenger_rna"
      ],
      "from": "rantasalo2016_constitutive_stf_vp16.mcherry_messenger_rna"
    },
    {
      "to": [
        "visualisation.rantasalo2016_constitutive_stf_vp16_mcherry_reporter"
      ],
      "from": "rantasalo2016_constitutive_stf_vp16.mcherry_reporter"
    },
    {
      "to": [
        "visualisation.rantasalo2016_constitutive_stf_vp16_cytosolic_transcription_factor"
      ],
      "from": "rantasalo2016_constitutive_stf_vp16.cytosolic_transcription_factor"
    },
    {
      "to": [
        "visualisation.rantasalo2016_constitutive_stf_vp16_nuclear_transcription_factor"
      ],
      "from": "rantasalo2016_constitutive_stf_vp16.nuclear_transcription_factor"
    },
    {
      "to": [
        "visualisation.rantasalo2016_constitutive_stf_vp16_state"
      ],
      "from": "rantasalo2016_constitutive_stf_vp16.state"
    },
    {
      "to": [
        "visualisation.rantasalo2016_constitutive_stf_vp16_summary"
      ],
      "from": "rantasalo2016_constitutive_stf_vp16.summary"
    },
    {
      "to": [
        "visualisation.rantasalo2016_constitutive_stf_vp16_species_labels"
      ],
      "from": "rantasalo2016_constitutive_stf_vp16.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "constitutive synthetic expression modulator. Rantasalo2015-Synthetic_expresion_modulator_constitutiveSTF_VP16This model is part of a family of models describing a modular synthetic expression system that modulates the expression level of a gene. It can be used to explore generegulation rantasalo2016 synthetic expresion modulator cons dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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