About lab
Aguilera 2014 - HIV latency. Interaction between HIV proteins and immune response Lab
Curated immunology lab using the bundled source model as the scientific source of truth.
What You'll See
This captured run documents the default Aguilera 2014 - HIV latency. Interaction between HIV proteins and immune response configuration for 10.0 time units with a 1.0 communication step. Default inputs include Initial Unresolved Infection Observable 1 and Initial Unresolved Infection Observable 2. Reported outputs include unresolved_infection_observable_1, unresolved_infection_observable_2, state, and summary. The screenshots below pair the run-interpretation table with Pathogen and immune response and Largest state excursions so the README shows both trajectories and the strongest state changes from the same dark-mode run.
Output Visualizations
The run-interpretation table summarizes the configured Aguilera 2014 - HIV latency. Interaction between HIV proteins and immune response simulation and its final-state diagnostics.
The Pathogen and immune response time series follows the selected immune, pathogen, tumor, or signaling quantities across the simulated horizon.
The largest state excursions chart ranks the state variables that moved furthest during the run.
Aguilera 2014 - HIV latency. Interactionbetween HIV proteins and immune response This model is described in the article: Studying HIV latency by modeling the interaction between HIV proteins and the i.
Runtime
Runs
Metadata
Manifest
{
"io": {
"inputs": [
{
"name": "initial_unresolved_infection_observable_1",
"label": "Initial Unresolved Infection Observable 1",
"units": "native source value",
"default": 1,
"maps_to": "immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model.initial_unresolved_infection_observable_1",
"description": "Initial Unresolved Infection Observable 1. Sets the initial value of bundled SBML species `V`."
},
{
"name": "initial_unresolved_infection_observable_2",
"label": "Initial Unresolved Infection Observable 2",
"units": "native source value",
"default": 0,
"maps_to": "immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model.initial_unresolved_infection_observable_2",
"description": "Initial Unresolved Infection Observable 2. Sets the initial value of bundled SBML species `C`."
}
],
"outputs": [
{
"name": "unresolved_infection_observable_1",
"maps_to": "immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model.unresolved_infection_observable_1"
},
{
"name": "unresolved_infection_observable_2",
"maps_to": "immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model.unresolved_infection_observable_2"
},
{
"name": "state",
"maps_to": "immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model.state"
},
{
"name": "summary",
"maps_to": "immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model.summary"
},
{
"name": "species_labels",
"maps_to": "immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model.species_labels"
}
]
},
"title": "Aguilera 2014 - HIV latency. Interaction between HIV proteins and immune response Lab",
"models": [
{
"path": "owned/models/immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model",
"alias": "immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model",
"provenance": {
"owned_path": "owned/models/immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model_state"
],
"from": "immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model.state"
},
{
"to": [
"visualisation.immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model_summary"
],
"from": "immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model.summary"
},
{
"to": [
"visualisation.immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model_species_labels"
],
"from": "immunology_sbml_aguilera_2014_hiv_latency_interaction_between_hi_biomd0000000573_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "Aguilera 2014 - HIV latency. Interactionbetween HIV proteins and immune response This model is described in the article: Studying HIV latency by modeling the interaction between HIV proteins and the i.",
"schema_version": "2.0"
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