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Simon2019 - NIK-dependent p100 processing into p52, Mass Action, SBML 2v4 Lab

About lab

This model represents NIK-dependent p100 processing into p52 with mass action kinetics. While this model shows identical dose-response to the Michaelis-Menten representation, when IkBd degradation is.

Runtime

Duration60
Comms Step2

Runs

Total0
Completed0
Failed0

Metadata

Packagesimon2019-nik-dependent-p100-processing-into-p52-mass-action-sbm
Created2026-05-16
Updated2026-05-16
pharmacologysignalingimmunologynfkbsbmltelluriumfaithfulbiomodels_ebivisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_p100_pool",
        "label": "Initial P100 Pool",
        "maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model.initial_p100_pool"
      },
      {
        "name": "initial_nik_pool",
        "label": "Initial NIK Pool",
        "maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model.initial_nik_pool"
      },
      {
        "name": "initial_p100_nik_complex",
        "label": "Initial P100 NIK Complex",
        "maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model.initial_p100_nik_complex"
      },
      {
        "name": "total_p100_boundary_pool",
        "label": "Total P100 Boundary Pool",
        "maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model.total_p100_boundary_pool"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Tracked source state",
        "maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model.species_labels"
      },
      {
        "name": "p100_nik_complex",
        "label": "P100 NIK Complex",
        "maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model.p100_nik_complex"
      },
      {
        "name": "p100_pool",
        "label": "P100 Pool",
        "maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model.p100_pool"
      },
      {
        "name": "p52_pool",
        "label": "P52 Pool",
        "maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model.p52_pool"
      },
      {
        "name": "nik_pool",
        "label": "NIK Pool",
        "maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model.nik_pool"
      }
    ]
  },
  "tags": [
    "pharmacology",
    "signaling",
    "immunology",
    "nfkb",
    "sbml",
    "tellurium",
    "faithful",
    "biomodels_ebi"
  ],
  "title": "Simon2019 - NIK-dependent p100 processing into p52, Mass Action, SBML 2v4 Lab",
  "models": [
    {
      "path": "owned/models/pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model",
      "alias": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model",
      "parameters": {
        "model_path": "data/BIOMD0000000868.xml",
        "integration_step": 0.2
      },
      "provenance": {
        "owned_path": "owned/models/pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model_state"
      ],
      "from": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model.state"
    },
    {
      "to": [
        "visualisation.pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model_summary"
      ],
      "from": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model.summary"
    },
    {
      "to": [
        "visualisation.pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model_species_labels"
      ],
      "from": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000868_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 60,
    "initial_inputs": {},
    "communication_step": 2
  },
  "description": "This model represents NIK-dependent p100 processing into p52 with mass action kinetics. While this model shows identical dose-response to the Michaelis-Menten representation, when IkBd degradation is.",
  "schema_version": "2.0"
}

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