About lab
Wang2007 - ATP induced intracellular Calicum Oscillation The model simulate the ATP-induced intracellular Ca 2+ oscillations and the quantitative effect of ATP concentration on the oscillation charact. It can be used to explore systemsbiology wang2007 atp induced intracellular calcium dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagewang2007-atp-induced-intracellular-calcium-oscillation-lab
Created2026-05-17
Updated2026-05-17
cellcyclemetabolismphysiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_calcium",
"label": "Initial Calcium",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.initial_calcium",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_ER`."
},
{
"name": "initial_calcium_2",
"label": "Initial Calcium 2",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.initial_calcium_2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_Cyt`."
},
{
"name": "initial_galpha_gtp",
"label": "Initial Galpha Gtp",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.initial_galpha_gtp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Galpha_GTP`."
},
{
"name": "initial_diacylglycerol",
"label": "Initial Diacylglycerol",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.initial_diacylglycerol",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DG`."
},
{
"name": "initial_aplc",
"label": "Initial Aplc",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.initial_aplc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `APLC`."
},
{
"name": "initial_model_state_plc",
"label": "Initial Model State Plc",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.initial_model_state_plc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PLC`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.species_labels"
},
{
"name": "calcium",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.calcium"
},
{
"name": "calcium_2",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.calcium_2"
},
{
"name": "galpha_gtp",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.galpha_gtp"
},
{
"name": "diacylglycerol",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.diacylglycerol"
},
{
"name": "aplc",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.aplc"
},
{
"name": "plc",
"maps_to": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.plc"
}
]
},
"tags": [
"cellcycle",
"metabolism",
"physiology",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Wang2007 Atp Induced Intracellular Calcium Oscillation Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model",
"alias": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model_state"
],
"from": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model_summary"
],
"from": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model_species_labels"
],
"from": "systemsbiology_sbml_wang2007_atp_induced_intracellular_calcium_oscil_biomd0000000145_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Wang2007 - ATP induced intracellular Calicum Oscillation The model simulate the ATP-induced intracellular Ca 2+ oscillations and the quantitative effect of ATP concentration on the oscillation charact. It can be used to explore systemsbiology wang2007 atp induced intracellular calcium dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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