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Mukandavire2020 - SEIR model of early COVID-19 transmission in South Africa Lab

About lab

Single-model lab wrapper for Mukandavire2020 - SEIR model of early COVID-19 transmission in South Africa. The emergence and fast global spread of COVID-19 has presented one of the greatest public health challenges in modern times with no proven cure or vaccine. Africa is still early in this epidemic, ther.

Runtime

Duration10
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagemukandavire2020-seir-model-of-early-covid-19-transmission-in-sou
Created2026-05-15
Updated2026-05-15
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "transmission_rate",
        "label": "Transmission Rate",
        "maps_to": "epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model.transmission_rate"
      },
      {
        "name": "exposed_progression_rate",
        "label": "Exposed Progression Rate",
        "maps_to": "epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model.exposed_progression_rate"
      },
      {
        "name": "recovery_rate",
        "label": "Recovery Rate",
        "maps_to": "epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model.recovery_rate"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Model state",
        "maps_to": "epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Species labels",
        "maps_to": "epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model.species_labels"
      },
      {
        "name": "exposed",
        "label": "Exposed",
        "maps_to": "epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model.exposed"
      },
      {
        "name": "infected",
        "label": "Infected",
        "maps_to": "epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model.infected"
      },
      {
        "name": "susceptible",
        "label": "Susceptible",
        "maps_to": "epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model.susceptible"
      },
      {
        "name": "recovered",
        "label": "Recovered",
        "maps_to": "epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model.recovered"
      }
    ]
  },
  "title": "Mukandavire2020 - SEIR model of early COVID-19 transmission in South Africa Lab",
  "models": [
    {
      "path": "owned/models/epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model",
      "alias": "epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model",
      "parameters": {
        "model_path": "data/BIOMD0000000978.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model_state"
      ],
      "from": "epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model.state"
    },
    {
      "to": [
        "visualisation.epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model_summary"
      ],
      "from": "epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model.summary"
    },
    {
      "to": [
        "visualisation.epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model_species_labels"
      ],
      "from": "epidemiology_sbml_mukandavire2020_seir_model_of_early_covid_19_tra_biomd0000000978_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Single-model lab wrapper for Mukandavire2020 - SEIR model of early COVID-19 transmission in South Africa. The emergence and fast global spread of COVID-19 has presented one of the greatest public health challenges in modern times with no proven cure or vaccine. Africa is still early in this epidemic, ther.",
  "schema_version": "2.0"
}

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