Amstein2022 Tnfr1 Signal Transduction Petri Net Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_c_flipl_mrna",
        "label": "Initial C Flipl MRNA",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.initial_c_flipl_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P95`."
      },
      {
        "name": "initial_xiap_mrna",
        "label": "Initial Xiap MRNA",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.initial_xiap_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P93`."
      },
      {
        "name": "initial_ik_b_mrna",
        "label": "Initial Ik B MRNA",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.initial_ik_b_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P79`."
      },
      {
        "name": "initial_bcl_2_mrna",
        "label": "Initial Bcl 2 MRNA",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.initial_bcl_2_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P96`."
      },
      {
        "name": "initial_a20_mrna",
        "label": "Initial A20 MRNA",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.initial_a20_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P92`."
      },
      {
        "name": "initial_t_bid_mom",
        "label": "Initial T Bid Mom",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.initial_t_bid_mom",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P105`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.species_labels"
      },
      {
        "name": "c_flipl_mrna",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.c_flipl_mrna"
      },
      {
        "name": "xiap_mrna",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.xiap_mrna"
      },
      {
        "name": "ik_b_mrna",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.ik_b_mrna"
      },
      {
        "name": "bcl_2_mrna",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.bcl_2_mrna"
      },
      {
        "name": "a20_mrna",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.a20_mrna"
      },
      {
        "name": "t_bid_mom",
        "maps_to": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.t_bid_mom"
      }
    ]
  },
  "tags": [
    "immunology",
    "signaling",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Amstein2022 Tnfr1 Signal Transduction Petri Net Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model",
      "alias": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model_state"
      ],
      "from": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model_summary"
      ],
      "from": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model_species_labels"
      ],
      "from": "systemsbiology_sbml_amstein2022_tnfr1_signal_transduction_petri_net_model2210170001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Systems Biology Amstein2022Tnfr1Signal Transduction Petri Net Model2210170001Model captures core biological behavior in the context of systemsbiology, sbml, biomodels_ebi using a biomodels_ebi-sourced OTHER mod. When you run it, you can observe state and evaluate how the modeled system changes across runs.",
  "schema_version": "2.0"
}