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Maurya2005 - Minimal Rom Gtpase Cycle Module Lab

About lab

Source-faithful physiology lab for Maurya et al. 2005. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagemaurya2005-minimal-rom-gtpase-cycle-module-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_differentials_a",
        "label": "Initial Differentials A",
        "maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.initial_differentials_a",
        "description": "Initial value for Differentials A. Maps to source symbol `A`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "molar"
        ]
      },
      {
        "name": "initial_differentials_d",
        "label": "Initial Differentials D",
        "maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.initial_differentials_d",
        "description": "Initial value for Differentials D. Maps to source symbol `D`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "molar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.variable_labels"
      },
      {
        "name": "differentials_a",
        "label": "Differentials A",
        "maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.differentials_a",
        "description": "Differentials A. Maps to source symbol `A`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "differentials_d",
        "label": "Differentials D",
        "maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.differentials_d",
        "description": "Differentials D. Maps to source symbol `D`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "differentials_g",
        "label": "Differentials G",
        "maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.differentials_g",
        "description": "Differentials G. Maps to source symbol `G`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "differentials_ga",
        "label": "Differentials Ga",
        "maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.differentials_ga",
        "description": "Differentials Ga. Maps to source symbol `GA`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "differentials_gd",
        "label": "Differentials Gd",
        "maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.differentials_gd",
        "description": "Differentials Gd. Maps to source symbol `GD`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "differentials_gt",
        "label": "Differentials Gt",
        "maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.differentials_gt",
        "description": "Differentials Gt. Maps to source symbol `GT`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Maurya2005 - Minimal Rom Gtpase Cycle Module Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model",
      "alias": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model",
      "parameters": {
        "model_path": "data/maurya_2005.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model_state"
      ],
      "from": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model_summary"
      ],
      "from": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model_trajectory"
      ],
      "from": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model_variable_labels"
      ],
      "from": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Maurya et al. 2005. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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