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Clean Biosimulant lab for systems signaling model: Ortega2006 - bistability from double phosphorylation in signal transduction. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
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Duration1
Comms Step0.1
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Metadata
Packageortega2006-bistability-from-double-phosphorylation-in-signal-tra
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_alpha",
"label": "Initial Alpha",
"maps_to": "signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model.initial_alpha",
"description": "Initial level of Alpha. Maps to SBML symbol `alpha`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "alpha",
"label": "Alpha",
"maps_to": "signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model.alpha",
"description": "Alpha. Maps to SBML symbol `alpha` and is emitted in native SBML units."
},
{
"name": "beta_response_parameter",
"label": "beta response parameter",
"maps_to": "signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model.beta_response_parameter",
"description": "beta response parameter. Maps to SBML symbol `beta` and is emitted in native SBML units."
},
{
"name": "gamma",
"label": "Gamma",
"maps_to": "signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model.gamma",
"description": "Gamma. Maps to SBML symbol `gamma` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Ortega2006 - bistability from double phosphorylation in signal transduction Lab",
"models": [
{
"path": "owned/models/signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model",
"alias": "signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model_state"
],
"from": "signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model.state"
},
{
"to": [
"visualisation.signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model_summary"
],
"from": "signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model_species_labels"
],
"from": "signaling_sbml_ortega2006_bistability_from_double_phosphorylati_biomd0000000258_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Ortega2006 - bistability from double phosphorylation in signal transduction. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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